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Nonnegative matrix factorization (NMF) is the problem of decomposing a given nonnegative $n \times m$ matrix $M$ into a product of a nonnegative $n \times d$ matrix $W$ and a nonnegative $d \times m$ matrix $H$. A longstanding open…

Computational Complexity · Computer Science 2017-03-24 Dmitry Chistikov , Stefan Kiefer , Ines Marušić , Mahsa Shirmohammadi , James Worrell

We present CAFA-evaluator, a powerful Python program designed to evaluate the performance of prediction methods on targets with hierarchical concept dependencies. It generalizes multi-label evaluation to modern ontologies where the…

In this article, we study algorithms for nonnegative matrix factorization (NMF) in various applications involving streaming data. Utilizing the continual nature of the data, we develop a fast two-stage algorithm for highly efficient and…

Optimization and Control · Mathematics 2021-01-22 Ran Gu , Qiang Du , Simon J. L. Billinge

Nonnegative matrix factorization (NMF) is a data analysis technique used in a great variety of applications such as text mining, image processing, hyperspectral data analysis, computational biology, and clustering. In this paper, we…

Optimization and Control · Mathematics 2012-08-13 Nicolas Gillis , François Glineur

Numerous tasks at the core of statistics, learning and vision areas are specific cases of ill-posed inverse problems. Recently, learning-based (e.g., deep) iterative methods have been empirically shown to be useful for these problems.…

Computer Vision and Pattern Recognition · Computer Science 2018-08-17 Risheng Liu , Shichao Cheng , Yi He , Xin Fan , Zhouchen Lin , Zhongxuan Luo

In this paper, we introduce a probabilistic model for learning nonnegative matrix factorization (NMF) that is commonly used for predicting missing values and finding hidden patterns in the data, in which the matrix factors are latent…

Machine Learning · Computer Science 2022-06-22 Jun Lu , Xuanyu Ye

Semi-Nonnegative Matrix Factorization (semi-NMF) extends classical Nonnegative Matrix Factorization (NMF) by allowing the basis matrix to contain both positive and negative entries, making it suitable for decomposing data with mixed signs.…

Machine Learning · Computer Science 2025-08-12 Lu Chenggang

Non-negative matrix factorization is a problem of dimensionality reduction and source separation of data that has been widely used in many fields since it was studied in depth in 1999 by Lee and Seung, including in compression of data,…

Machine Learning · Computer Science 2021-03-19 Raimon Fabregat , Nelly Pustelnik , Paulo Gonçalves , Pierre Borgnat

Nonnegative Matrix Factorization (NMF) is a widely applied technique in the fields of machine learning and data mining. Graph Regularized Non-negative Matrix Factorization (GNMF) is an extension of NMF that incorporates graph regularization…

Machine Learning · Computer Science 2024-03-19 Zhen Wang , Wenwen Min

Non-negative matrix factorization (NMF) is a dimensionality reduction technique which tends to produce a sparse representation of data. Commonly, the error between the actual and recreated matrices is used as an objective function, but this…

Machine Learning · Computer Science 2019-02-06 Steven Squires , Adam Prugel Bennett , Mahesan Niranjan

Matrix factorization is an important mathematical problem encountered in the context of dictionary learning, recommendation systems and machine learning. We introduce a new `decimation' scheme that maps it to neural network models of…

Disordered Systems and Neural Networks · Physics 2023-07-12 Francesco Camilli , Marc Mézard

In the Python world, NumPy arrays are the standard representation for numerical data. Here, we show how these arrays enable efficient implementation of numerical computations in a high-level language. Overall, three techniques are applied…

Mathematical Software · Computer Science 2011-03-14 Stefan Van Der Walt , S. Chris Colbert , Gaël Varoquaux

Multiresolution Matrix Factorization (MMF) was recently introduced as an alternative to the dominant low-rank paradigm in order to capture structure in matrices at multiple different scales. Using ideas from multiresolution analysis (MRA),…

Numerical Analysis · Mathematics 2019-10-14 Pramod Kaushik Mudrakarta , Shubhendu Trivedi , Risi Kondor

Nonnegative Matrix Factorization (NMF) aims to factorize a matrix into two optimized nonnegative matrices appropriate for the intended applications. The method has been widely used for unsupervised learning tasks, including recommender…

Machine Learning · Statistics 2015-07-14 Junyu Xuan , Jie Lu , Guangquan Zhang , Richard Yi Da Xu , Xiangfeng Luo

Existing nonnegative matrix factorization methods focus on learning global structure of the data to construct basis and coefficient matrices, which ignores the local structure that commonly exists among data. In this paper, we propose a new…

Machine Learning · Computer Science 2019-07-10 Chong Peng , Zhao Kang , Chenglizhao Chen , Qiang Cheng

Recently, deep matrix factorization has been established as a powerful model for unsupervised tasks, achieving promising results, especially for multi-view clustering. However, existing methods often lack effective feature selection…

Machine Learning · Statistics 2024-12-04 Yasser Khalafaoui , Basarab Matei , Martino Lovisetto , Nistor Grozavu

Matrix factorization (MF) is employed by many popular algorithms, e.g., collaborative filtering. The emerging GPU technology, with massively multicore and high intra-chip memory bandwidth but limited memory capacity, presents an opportunity…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-10-25 Wei Tan , Liangliang Cao , Liana Fong

Nonnegative matrix factorization (NMF) is one of the most frequently-used matrix factorization models in data analysis. A significant reason to the popularity of NMF is its interpretability and the `parts of whole' interpretation of its…

Machine Learning · Computer Science 2018-01-19 Sanjar Karaev , James Hook , Pauli Miettinen

We propose a method for computing binary orthogonal non-negative matrix factorization (BONMF) for clustering and classification. The method is tested on several representative real-world data sets. The numerical results confirm that the…

Machine Learning · Computer Science 2022-10-20 S. Fathi Hafshejani , D. Gaur , S. Hossain , R. Benkoczi

Binary data matrices can represent many types of data such as social networks, votes, or gene expression. In some cases, the analysis of binary matrices can be tackled with nonnegative matrix factorization (NMF), where the observed data…

Machine Learning · Statistics 2020-06-23 Alberto Lumbreras , Louis Filstroff , Cédric Févotte