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Fortran's prominence in scientific computing requires strategies to ensure both that legacy codes are efficient on high-performance computing systems, and that the language remains attractive for the development of new high-performance…

Instrumentation and Methods for Astrophysics · Physics 2024-09-13 James McKevitt , Eduard I. Vorobyov , Igor Kulikov

The 3D Discrete Fourier Transform (DFT) is a technique used to solve problems in disparate fields. Nowadays, the commonly adopted implementation of the 3D-DFT is derived from the Fast Fourier Transform (FFT) algorithm. However, evidence…

Computational Physics · Physics 2024-07-10 Nitin Malapally , Viacheslav Bolnykh , Estela Suarez , Paolo Carloni , Thomas Lippert , Davide Mandelli

In this paper, we explore how numerical calculations can be accelerated by implementing several numerical methods of fractional-order systems using parallel computing techniques. We investigate the feasibility of parallel computing…

Dynamical Systems · Mathematics 2016-11-29 A. Baban , C. Bonchiş , A. Fikl , F. Roşu

Fast Fourier Transforms (FFT) are widely used to reduce memory and computational costs in deep learning. However, existing implementations, including standard FFT and real FFT (rFFT), cannot achieve true in-place computation. In particular,…

Machine Learning · Computer Science 2025-12-23 Xinyu Ding , Bangtian Liu , Siyu Liao , Zhongfeng Wang

We have developed an algorithm for transferring radiation in three-dimensional space. The algorithm computes radiation source and sink terms using the Fast Fourier Transform (FFT) method, based on a formulation in which the integral of any…

Astrophysics · Physics 2009-11-07 Renyue Cen

Finite element method (FEM) is one of the most important numerical methods in modern engineering design and analysis. Since traditional serial FEM is difficult to solve large FE problems efficiently and accurately, high-performance parallel…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-06-01 Meng Wu , Can Yang , Taoran Xiang , Daning Cheng

Among the many possible approaches for the parallelization of self-organizing networks, and in particular of growing self-organizing networks, perhaps the most common one is producing an optimized, parallel implementation of the standard…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-03-31 Giacomo Parigi , Angelo Stramieri , Danilo Pau , Marco Piastra

In this work, we consider alternative discretizations for PDEs which use expansions involving integral operators to approximate spatial derivatives. These constructions use explicit information within the integral terms, but treat boundary…

Computational Physics · Physics 2024-11-12 Andrew J. Christlieb , Pierson T. Guthrey , William A. Sands , Mathialakan Thavappiragasm

We develop an algorithm that finds the consensus of many different clustering solutions of a graph. We formulate the problem as a median set partitioning problem and propose a greedy optimization technique. Unlike other approaches that find…

Information Retrieval · Computer Science 2024-08-22 Md Taufique Hussain , Mahantesh Halappanavar , Samrat Chatterjee , Filippo Radicchi , Santo Fortunato , Ariful Azad

We present a fast, adaptive multiresolution algorithm for applying integral operators with a wide class of radially symmetric kernels in dimensions one, two and three. This algorithm is made efficient by the use of separated representations…

Numerical Analysis · Mathematics 2007-08-14 Gregory Beylkin , Vani Cheruvu , Fernando Pérez

Energy evaluation using fast Fourier transforms enables sampling billions of putative complex structures and hence revolutionized rigid protein-protein docking. However, in current methods efficient acceleration is achieved only in either…

In this work, the fast-convolving reproducing kernel particle method (FC-RKPM) is introduced. This method is hundreds to millions of times faster than the traditional RKPM for 3D meshfree simulations. In this approach, the meshfree…

Numerical Analysis · Mathematics 2024-04-01 Siavash Jafarzadeh , Michael Hillman

In this paper we present two versions of a parallel finger structure FS on p processors that supports searches, insertions and deletions, and has a finger at each end. This is to our knowledge the first implementation of a parallel search…

Data Structures and Algorithms · Computer Science 2019-10-11 Seth Gilbert , Wei Quan Lim

This work introduces an innovative parallel, fully-distributed finite element framework for growing geometries and its application to metal additive manufacturing. It is well-known that virtual part design and qualification in additive…

Computational Engineering, Finance, and Science · Computer Science 2019-04-30 Eric Neiva , Santiago Badia , Alberto F. Martín , Michele Chiumenti

This paper is concerned with the fast computation of Fourier integral operators of the general form $\int_{\R^d} e^{2\pi\i \Phi(x,k)} f(k) d k$, where $k$ is a frequency variable, $\Phi(x,k)$ is a phase function obeying a standard…

Numerical Analysis · Mathematics 2008-09-05 Emmanuel Candes , Laurent Demanet , Lexing Ying

A simple method for improving cache efficiency of serial and parallel explicit finite procedure with application to casting solidification simulation over three-dimensional complex geometries is presented. The method is based on division of…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-05-19 Ruhollah Tavakoli

We present parallel algorithms for wavelet tree construction with polylogarithmic depth, improving upon the linear depth of the recent parallel algorithms by Fuentes-Sepulveda et al. We experimentally show on a 40-core machine with two-way…

Data Structures and Algorithms · Computer Science 2016-11-15 Julian Shun

This paper shows that it is possible to improve the computational cost, the memory requirements and the accuracy of Quick Fourier Transform (QFT) algorithm for power-of-two FFT (Fast Fourier Transform) just introducing a slight modification…

Data Structures and Algorithms · Computer Science 2013-01-07 Lorenzo Pasquini

In this work, we present two parallel algorithms for the large-scale discrete Fourier transform (DFT) on Tensor Processing Unit (TPU) clusters. The two parallel algorithms are associated with two formulations of DFT: one is based on the…

Mathematical Software · Computer Science 2020-12-15 Tianjian Lu , Yi-Fan Chen , Blake Hechtman , Tao Wang , John Anderson

This article introduces an algorithm, MergeShuffle, which is an extremely efficient algorithm to generate random permutations (or to randomly permute an existing array). It is easy to implement, runs in $n\log_2 n + O(1)$ time, is in-place,…

Data Structures and Algorithms · Computer Science 2015-08-14 Axel Bacher , Olivier Bodini , Alexandros Hollender , Jérémie Lumbroso
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