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This article describes algorithms for the hybrid parallelization and SIMD vectorization of molecular dynamics simulations with short-range forces. The parallelization method combines domain decomposition with a thread-based parallelization…

Materials Science · Physics 2017-09-13 Chris M. Mangiardi , Ralf Meyer

Computer simulation is an important tool for scientific progress, especially when lab experiments are either extremely costly and difficult or lack the required resolution. However, all of the simulation methods come with limitations. In…

Fluid Dynamics · Physics 2023-08-04 Edward R. Smith , Panagiotis E. Theodorakis

Sequential computation is well understood but does not scale well with current technology. Within the next decade, systems will contain large numbers of processors with potentially thousands of processors per chip. Despite this, many…

Hardware Architecture · Computer Science 2015-11-17 James Hanlon

The latest trends in high-performance computing systems show an increasing demand on the use of a large scale multicore systems in a efficient way, so that high compute-intensive applications can be executed reasonably well. However, the…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-02-25 Juliana M. N. Silva , Cristina Boeres , Lúcia M. A. Drummond , Artur A. Pessoa

The problem of identifying intersections between two sets of d-dimensional axis-parallel rectangles appears frequently in the context of agent-based simulation studies. For this reason, the High Level Architecture (HLA) specification -- a…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-02-28 Moreno Marzolla , Gabriele D'Angelo

The simulation of large ensembles of particles is usually parallelized by partitioning the domain spatially and using message passing to communicate between the processes handling neighboring subdomains. The particles are represented as…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-08-03 Sebastian Eibl , Ulrich Rüde

This work analyses the effects of sequential-to-parallel synchronization and inter-core communication on multicore performance, speedup and scaling. A modification of Amdahl law is formulated, to reflect the finding that parallel speedup is…

Hardware Architecture · Computer Science 2013-06-17 Leonid Yavits , Amir Morad , Ran Ginosar

The amount of available data about complex systems is increasing every year, measurements of larger and larger systems are collected and recorded. A natural representation of such data is given by networks, whose size is following the size…

Physics and Society · Physics 2012-05-07 Peter Pollner , Gergely Palla , Tamas Vicsek

In this paper we analyze, evaluate, and improve the performance of training generalized linear models on modern CPUs. We start with a state-of-the-art asynchronous parallel training algorithm, identify system-level performance bottlenecks,…

Machine Learning · Computer Science 2018-12-20 Nikolas Ioannou , Celestine Dünner , Kornilios Kourtis , Thomas Parnell

Increasing data volumes delivered by a new generation of radio interferometers require computationally efficient and robust calibration algorithms. In this paper, we propose distributed calibration as a way of improving both computational…

Instrumentation and Methods for Astrophysics · Physics 2015-06-23 Sarod Yatawatta

With the growing complexity and capability of contemporary robotic systems, the necessity of sophisticated computing solutions to efficiently handle tasks such as real-time processing, sensor integration, decision-making, and control…

Robotics · Computer Science 2025-09-09 Md Rafid Islam

In order to run Computational Fluid Dynamics (CFD) codes on large scale infrastructures, parallel computing has to be used because of the computational intensive nature of the problems. In this paper we investigate the ADAPT platform where…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-05-25 Imad Kissami , Christophe Cerin , Fayssal Benkhaldoun , Gilles Scarella

Recent advances in computer architecture and networking opened the opportunity for parallelizing the clustering algorithms. This divide-and-conquer strategy often results in better results to centralized clustering with a much-improved time…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-02-15 Ahmed Ibrahim , Rokaya Hassanien

By integrating edge computing with parallel computing, distributed edge computing (DEC) makes use of distributed devices in edge networks to perform computing in parallel, which can substantially reduce service delays. In this paper, we…

Networking and Internet Architecture · Computer Science 2020-02-10 Xiaowen Gong

In this paper we propose a parallel coordinate descent algorithm for solving smooth convex optimization problems with separable constraints that may arise e.g. in distributed model predictive control (MPC) for linear network systems. Our…

Optimization and Control · Mathematics 2014-11-19 Ion Necoara , Dragos Clipici

The goal of this work is to parallelize the multistep scheme for the numerical approximation of the backward stochastic differential equations (BSDEs) in order to achieve both, a high accuracy and a reduction of the computation time as…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-04-18 Lorenc Kapllani , Long Teng

Heterogeneous many-cores are now an integral part of modern computing systems ranging from embedding systems to supercomputers. While heterogeneous many-core design offers the potential for energy-efficient high-performance, such potential…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-11 Jianbin Fang , Chun Huang , Tao Tang , Zheng Wang

Decentralized Federated Graph Learning (DFGL) overcomes potential bottlenecks of the parameter server in FGL by establishing a peer-to-peer (P2P) communication network among workers. However, while extensive cross-worker communication of…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-11 Shilong Wang , Jianchun Liu , Hongli Xu , Chenxia Tang , Qianpiao Ma , Liusheng Huang

Deep Neural Networks (DNNs) are becoming an important tool in modern computing applications. Accelerating their training is a major challenge and techniques range from distributed algorithms to low-level circuit design. In this survey, we…

Machine Learning · Computer Science 2018-09-18 Tal Ben-Nun , Torsten Hoefler

Communication scheduling aims to reduce communication bottlenecks in data parallel training (DP) by maximizing the overlap between computation and communication. However, existing schemes fall short due to three main issues: (1) hard data…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-24 Lin Meng , Yuzhong Sun