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We consider the number of spanning trees in circulant graphs of $\beta n$ vertices with generators depending linearly on $n$. The matrix tree theorem gives a closed formula of $\beta n$ factors, while we derive a formula of $\beta-1$…

Bayesian networks are a widely-used class of probabilistic graphical models capable of representing symmetric conditional independence between variables of interest using the topology of the underlying graph. For categorical variables, they…

We seek to automate the design of molecules based on specific chemical properties. In computational terms, this task involves continuous embedding and generation of molecular graphs. Our primary contribution is the direct realization of…

We study the free (associative, non-commutative) Baxter algebra on one generator. The first explicit description of this object is due to Ebrahimi-Fard and Guo. We provide an alternative description in terms of a certain class of trees,…

We resolve a question of Gillespie, Griffin, and Levinson that asks for a combinatorial bijection between two classes of trivalent trees, tournament trees and slide trees, that both naturally arise in the intersection theory of the moduli…

The (non-spanning) tree-decorated quadrangulation is a random pair formed by a quadrangulation and a subtree chosen uniformly over the set of pairs with prescribed size. In this paper we study the tree-decorated quadrangulation in the…

The modular decomposition of a symmetric map $\delta\colon X\times X \to \Upsilon$ (or, equivalently, a set of symmetric binary relations, a 2-structure, or an edge-colored undirected graph) is a natural construction to capture key features…

We study a notion of potential isomorphism, where two structures are said to be potentially isomorphic if they are isomorphic in some generic extension that preserves stationary sets and does not add new sets of cardinality less than the…

For a labeled tree on the vertex set $\set{1,2,\ldots,n}$, the local direction of each edge $(i\,j)$ is from $i$ to $j$ if $i<j$. For a rooted tree, there is also a natural global direction of edges towards the root. The number of edges…

This is a survey article on trees, with a modest number of proofs to give a flavor of the way these topologies can be efficiently handled. Trees are defined in set-theorist fashion as partially ordered sets in which the elements below each…

In 1998, B\"{o}cker and Dress gave a 1-to-1 correspondence between symbolically dated rooted trees and symbolic ultrametrics. We consider the corresponding problem for unrooted trees. More precisely, given a tree $T$ with leaf set $X$ and a…

The active bijection forms a package of results studied by the authors in a series of papers in oriented matroids. The present paper is intended to state the main results in the particular case, and more widespread language, of graphs. We…

We construct vertex transitive lattices on products of trees of arbitrary dimension $d \geq 1$ based on quaternion algebras over global fields with exactly two ramified places. Starting from arithmetic examples, we find non-residually…

Reverse search is a convenient method for enumerating structured objects, that can be used both to address theoretical issues and to solve data mining problems. This method has already been successfully developed to handle unordered trees.…

Any algebraic connection on a vector bundle on a smooth complex algebraic curve determines an irregular class and in turn a fission tree at each puncture. The fission trees are the discrete data classifying the admissible deformation…

The three-in-a-tree algorithm of Chudnovsky and Seymour decides in time $O(n^4)$ whether three given vertices of a graph belong to an induced tree. Here, we study four-in-a-tree for triangle-free graphs. We give a structural answer to the…

As a unification of increasing trees and plane trees, the weakly increasing trees labeled by a multiset was introduced by Lin-Ma-Ma-Zhou in 2021. Motived by some symmetries in plane trees proved recently by Dong, Du, Ji and Zhang, we…

We generalize the concept of ascending and descending runs from permutations to rooted labelled trees and mappings, i.e., functions from the set $\{1, \dots, n\}$ into itself. A combinatorial decomposition of the corresponding functional…

A unicellular map is a map which has only one face. We give a bijection between a dominant subset of rooted unicellular maps of fixed genus and a set of rooted plane trees with distinguished vertices. The bijection applies as well to the…

A \emph{binary tanglegram} is a drawing of a pair of rooted binary trees whose leaf sets are in one-to-one correspondence; matching leaves are connected by inter-tree edges. For applications, for example, in phylogenetics, it is essential…