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Bioinformatics workflows are essential for complex biological data analyses and are often described in scientific articles with source code in public repositories. Extracting detailed workflow information from articles can improve…

Computation and Language · Computer Science 2025-03-11 Clémence Sebe , Sarah Cohen-Boulakia , Olivier Ferret , Aurélie Névéol

Relation Extraction (RE) is one of the fundamental tasks in Information Extraction and Natural Language Processing. Dependency trees have been shown to be a very useful source of information for this task. The current deep learning models…

Computation and Language · Computer Science 2019-07-09 Amir Pouran Ben Veyseh , Thien Huu Nguyen , Dejing Dou

Logical specifications play a key role in the formal analysis of behavioural models. Automating the derivation of such specifications is particularly valuable in complex systems, where manual construction is time-consuming and error-prone.…

Software Engineering · Computer Science 2025-06-11 Radoslaw Klimek , Julia Witek

Dependency analysis is a technique to identify and determine data dependencies between service protocols. Protocols evolving concurrently in the service composition need to impose an order in their execution if there exist data…

Software Engineering · Computer Science 2010-07-30 Javier Cubo , Ernesto Pimentel , Gwen Salaün , Carlos Canal

This paper introduces an explanation framework designed to enhance the quality of rules in knowledge-based reasoning systems based on dataset-driven insights. The traditional method for rule induction from data typically requires…

Artificial Intelligence · Computer Science 2025-02-04 Oshani Seneviratne , Brendan Capuzzo , William Van Woensel

Execution of concurrent programs implies frequent switching between different thread contexts. This property perplexes analyzing and reasoning about concurrent programs. Trace simplification is a technique that aims at alleviating this…

Software Engineering · Computer Science 2014-05-20 Mohamed A. El-Zawawy , Mohammad N. Alanazi

Multimodal large language models increasingly solve vision-centric tasks by calling external tools for visual inspection, OCR, retrieval, calculation, and multi-step reasoning. Current tool-using agents usually expose the executed tool…

Computation and Language · Computer Science 2026-05-12 Bihui Yu , Caijun Jia , Jing Chi , Xiaohan Liu , Yining Wang , He Bai , Yuchen Liu , Jingxuan Wei , Junnan Zhu

Event logs extracted from information systems offer a rich foundation for understanding and improving business processes. In many real-world applications, it is possible to distinguish between desirable and undesirable process executions,…

Artificial Intelligence · Computer Science 2025-11-03 Ali Norouzifar , Wil van der Aalst

Analytic provenance can be visually encoded to help users track their ongoing analysis trajectories, recall past interactions, and inform new analytic directions. Despite its significance, provenance is often hardwired into analytics…

Human-Computer Interaction · Computer Science 2025-05-20 Arpit Narechania , Shunan Guo , Eunyee Koh , Alex Endert , Jane Hoffswell

Fallacies are used as seemingly valid arguments to support a position and persuade the audience about its validity. Recognizing fallacies is an intrinsically difficult task both for humans and machines. Moreover, a big challenge for…

Computation and Language · Computer Science 2023-01-25 Tariq Alhindi , Tuhin Chakrabarty , Elena Musi , Smaranda Muresan

We propose a formal approach for relating abstract separation logic library specifications with the trace properties they enforce on interactions between a client and a library. Separation logic with abstract predicates enforces a resource…

Programming Languages · Computer Science 2017-02-13 Lars Birkedal , Thomas Dinsdale-Young , Guilhem Jaber , Kasper Svendsen , Nikos Tzevelekos

The emergence of Cloud computing provides a new computing paradigm for scientific workflow execution. It provides dynamic, on-demand and scalable resources that enable the processing of complex workflow-based experiments. With the ever…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-03-20 Khawar Hasham , Kamran Munir , Richard McClatchey

Network inference is the process of learning the properties of complex networks from data. Besides using information about known links in the network, node attributes and other forms of network metadata can help to solve network inference…

Data Analysis, Statistics and Probability · Physics 2021-03-29 Oscar Fajardo-Fontiveros , Marta Sales-Pardo , Roger Guimera

Monitoring and analyzing process traces is a critical task for modern companies and organizations. In scenarios where there is a gap between trace events and reference business activities, this entails an interpretation problem, amounting…

Artificial Intelligence · Computer Science 2026-05-26 Bettina Fazzinga , Sergio Flesca , Filippo Furfaro , Luigi Pontieri , Francesco Scala

Comprehensive specifications are essential for various activities across the entire validation continuum for system-on-chip (SoC) designs. However, specifications are often ambiguous, incomplete, or even contain inconsistencies or errors.…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-05 Yuting Cao , Parijat Mukherjee , Mahesh Ketkar , Jin Yang , Hao Zheng

Data provenance consists in bookkeeping meta information during query evaluation, in order to enrich query results with their trust level, likelihood, evaluation cost, and more. The framework of semiring provenance abstracts from the…

Databases · Computer Science 2022-05-09 Camille Bourgaux , Pierre Bourhis , Liat Peterfreund , Michael Thomazo

Named entity recognition (NER), which focuses on the extraction of semantically meaningful named entities and their semantic classes from text, serves as an indispensable component for several down-stream natural language processing (NLP)…

Computation and Language · Computer Science 2018-10-23 Zhanming Jie , Aldrian Obaja Muis , Wei Lu

Real-world scenarios demand reasoning about process, more than final outcome prediction, to discover latent causal chains and better understand complex systems. It requires the learning algorithms to offer both accurate predictions and…

Artificial Intelligence · Computer Science 2019-01-09 Xiaoran Xu , Songpeng Zu , Chengliang Gao , Yuan Zhang , Wei Feng

Data analytics often involves hypothetical reasoning: repeatedly modifying the data and observing the induced effect on the computation result of a data-centric application. Previous work has shown that fine-grained data provenance can help…

Databases · Computer Science 2020-07-13 Daniel Deutch , Yuval Moskovitch , Noam Rinetzky

In this paper, we investigate how we can leverage Spark platform for efficiently processing provenance queries on large volumes of workflow provenance data. We focus on processing provenance queries at attribute-value level which is the…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-10-26 Rajmohan C , Pranay Lohia , Himanshu Gupta , Siddhartha Brahma , Mauricio Hernandez , Sameep Mehta