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We propose an automatable data-driven methodology for robust nonlinear reduced-order modelling from time-resolved snapshot data. In the kinematical coarse-graining, the snapshots are clustered into few centroids representable for the whole…

Fluid Dynamics · Physics 2020-12-02 Hao Li , Daniel Fernex , Richard Semaan , Jianguo Tan , Marek Morzyński , Bernd R. Noack

Complex systems' modeling and simulation are powerful ways to investigate a multitude of natural phenomena providing extended knowledge on their structure and behavior. However, enhanced modeling and simulation require integration of…

We describe a novel method for modeling non-stationary multivariate time series, with time-varying conditional dependencies represented through dynamic networks. Our proposed approach combines traditional multi-scale modeling and network…

Methodology · Statistics 2017-12-25 Xinyu Kang , Apratim Ganguly , Eric D. Kolaczyk

The Caenorhabditis Elegans (C.elegans) nematodes have long been a model organism for quantitative behavioral analysis, due to their tractable nervous system and well-characterized genetics. In particular, dynamic diffraction has been a…

Chaotic Dynamics · Physics 2026-03-04 Dimitrios Tzepos , Jenny Magnes

Recently, some studies started to unveil the wealthy of interactions that occur between groups of nodes when looking at the small scale of interactions taking place in complex networks. Such findings claim for a new systematic methodology…

Physics and Society · Physics 2016-07-26 Cesar H. Comin , João B. Bunoro , Matheus P. Viana , Luciano da F. Costa

Many complex molecular systems owe their properties to local dynamic rearrangements or fluctuations that, despite the rise of machine learning (ML) and sophisticated structural descriptors, remain often difficult to detect. Here we show an…

Chemical Physics · Physics 2023-08-16 Martina Crippa , Annalisa Cardellini , Cristina Caruso , Giovanni M. Pavan

The evolution of communities in dynamic (time-varying) network data is a prominent topic of interest. A popular approach to understanding these dynamic networks is to embed the dyadic relations into a latent metric space. While methods for…

Methodology · Statistics 2020-03-18 Joshua Daniel Loyal , Yuguo Chen

Rich, spontaneous brain activity has been observed across a range of different temporal and spatial scales. These dynamics are thought to be important t for efficient neural functioning. Experimental evidence suggests that these neural…

Neurons and Cognition · Quantitative Biology 2015-01-21 Peter J. Hellyer , Barbara Jachs , Robert Leech , Claudia Clopath

To survive in ever-changing environments, living organisms need to continuously combine the ongoing external inputs they receive, representing present conditions, with their dynamical internal state, which includes influences of past…

Neurons and Cognition · Quantitative Biology 2024-02-09 Maria Sol Vidal-Saez , Oscar Vilarroya , Jordi Garcia-Ojalvo

Discovering the underlying dynamics of complex systems from data is an important practical topic. Constrained optimization algorithms are widely utilized and lead to many successes. Yet, such purely data-driven methods may bring about…

Dynamical Systems · Mathematics 2023-05-17 Nan Chen , Yinling Zhang

Using molecular dynamics simulations, we study the slow dynamics of supercooled liquids confined in a random matrix of immobile obstacles. We study the dynamical crossover from glass-like to Lorentz-gas-like behavior in terms of the density…

Soft Condensed Matter · Physics 2011-05-30 Kang Kim , Kunimasa Miyazaki , Shinji Saito

Dynamic multilayer networks frequently represent the structure of multiple co-evolving relations; however, statistical models are not well-developed for this prevalent network type. Here, we propose a new latent space model for dynamic…

Methodology · Statistics 2021-03-25 Joshua Daniel Loyal , Yuguo Chen

Predictive simulations of complex systems are essential for applications ranging from weather forecasting to drug design. The veracity of these predictions hinges on their capacity to capture the effective system dynamics. Massively…

Computational Physics · Physics 2021-10-20 Pantelis R. Vlachas , Georgios Arampatzis , Caroline Uhler , Petros Koumoutsakos

We experimentally studied the locomotion of the nematode C. elegans in both fluidic and granular media. In this fluid dynamics video, we show the motility gaits of the nematode in these two environments. The motility of the nematode C.…

Fluid Dynamics · Physics 2011-10-17 X. N. Shen , G. Juarez , P. E. Arratia

An organism's ability to move freely is a fundamental behaviour in the animal kingdom. To understand animal locomotion requires a characterisation of the material properties, as well as the biomechanics and physiology. We present a…

Biological Physics · Physics 2017-02-17 Netta Cohen , Thomas Ranner

People organize in groups and contagions spread across them. A simple stochastic process, yet complex to model due to dynamical correlations within and between groups. Moreover, groups can evolve if agents join or leave in response to…

Physics and Society · Physics 2025-05-22 Giulio Burgio , Guillaume St-Onge , Laurent Hébert-Dufresne

Active systems across scales, ranging from molecular machines to human crowds, are usually modeled as assemblies of self-propelled particles driven by internally generated forces. However, these models often assume memoryless dynamics and…

Statistical Mechanics · Physics 2025-12-10 Marc Besse , Raphaël Voituriez

The characterization of the "most connected" nodes in static or slowly evolving complex networks has helped in understanding and predicting the behavior of social, biological, and technological networked systems, including their robustness…

Physics and Society · Physics 2010-10-21 Scott A. Hill , Dan Braha

The relationship between structure and dynamics in glassy fluids remains an intriguing open question. Recent work has shown impressive advances in our ability to predict local dynamics using structural features, most notably due to the use…

Soft Condensed Matter · Physics 2023-04-19 Rinske M. Alkemade , Frank Smallenburg , Laura Filion

Self-organization is ubiquitous in nature and mind. However, machine learning and theories of cognition still barely touch the subject. The hurdle is that general patterns are difficult to define in terms of dynamical equations and…

Artificial Intelligence · Computer Science 2023-02-07 Danilo Vasconcellos Vargas , Tham Yik Foong , Heng Zhang