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In this review, we discuss the applications of the theory of birth-and-death processes to problems in biology, primarily, those of evolutionary genomics. The mathematical principles of the theory of these processes are briefly described.…

Quantitative Methods · Quantitative Biology 2007-05-23 Artem S. Novozhilov , Georgy P. Karev , Eugene V. Koonin

In this paper we study long-term evolution of a finite system of locally interacting birth-and-death processes labelled by vertices of a finite connected graph. A detailed description of the asymptotic behaviour is obtained in the case of…

Probability · Mathematics 2015-06-19 Vadim Shcherbakov , Stanislav Volkov

General properties of linear propagation of discretized light in homogeneous and curved waveguide arrays are comprehensively investigated and compared to those of paraxial diffraction in continuous media. In particular, general laws…

Optics · Physics 2015-05-14 S. Longhi

This paper investigates additive processes with respect to several different independences in non-commutative probability in terms of the convolution hemigroups of the distributions of the increments of the processes. In particular, we…

Probability · Mathematics 2026-01-13 Takahiro Hasebe , Ikkei Hotta , Takuya Murayama

We call "Dyson process" any process on ensembles of matrices in which the entries undergo diffusion. We are interested in the distribution of the eigenvalues (or singular values) of such matrices. In the original Dyson process it was the…

Probability · Mathematics 2007-05-23 Craig A. Tracy , Harold Widom

Spreading from a seed is studied by Monte Carlo simulation on a square lattice with two types of sites affecting the rates of birth and death. These systems exhibit a critical transition between survival and extinction. For time- dependent…

Disordered Systems and Neural Networks · Physics 2009-11-07 Gyorgy Szabo , Hajnalka Gergely , Beata Oborny

Using a simple model with link removals as well as link additions, we show that an evolving network is scale free with a degree exponent in the range of (2, 4]. We then establish a relation between the network evolution and a set of…

Mathematical Physics · Physics 2007-05-23 Dinghua Shi , Liming Liu , Xiang Zhu , Huijie Zhou , Binbin Wang

Individual-based models of chemical or biological dynamics usually consider individual entities diffusing in space and performing a birth-death type dynamics. In this work we study the properties of a model in this class where the birth…

Statistical Mechanics · Physics 2009-11-11 Emilio Hernandez-Garcia , Cristobal Lopez

We study a multi-type Ehrenfest process modeled as a finite quasi-birth-death (QBD) process. We assume that the transitions are allowed only to the two adjacent levels of the same phase and are characterized by linear rates. The crucial…

Probability · Mathematics 2025-12-23 Giulia Di Nunno , Barbara Martinucci , Serena Spina

Deep Gaussian Processes learn probabilistic data representations for supervised learning by cascading multiple Gaussian Processes. While this model family promises flexible predictive distributions, exact inference is not tractable.…

Machine Learning · Statistics 2020-10-23 Jakob Lindinger , David Reeb , Christoph Lippert , Barbara Rakitsch

When two (possibly different in distribution) continuous-state branching processes with immigration are present, we study the relative frequency of one of them when the total mass is forced to be constant at a dense set of times. This leads…

Probability · Mathematics 2023-03-14 María Emilia Caballero , Adrián González Casanova , José-Luis Pérez

The Bernstein operator is known as a typical example of positive linear operators which uniformly approximates continuous functions on $[0, 1]$. In the present paper, we introduce a multidimensional extension of the Bernstein operator which…

Probability · Mathematics 2023-10-24 Takatoshi Hirano , Ryuya Namba

The $\beta$ ensembles are a class of eigenvalue probability densities which generalise the invariant ensembles of classical random matrix theory. In the case of the Gaussian and Laguerre weights, the corresponding eigenvalue densities are…

Mathematical Physics · Physics 2018-12-20 Peter J. Forrester , Allan K. Trinh

I introduce a family of closeness functions between causal Lorentzian geometries of finite volume and arbitrary underlying topology. When points are randomly scattered in a Lorentzian manifold, with uniform density according to the volume…

General Relativity and Quantum Cosmology · Physics 2015-06-25 Luca Bombelli

Recent work of Bornemann has uncovered hitherto hidden integrable structures relating to the asymptotic expansion of quantities at the soft edge of Gaussian and Laguerre random matrix ensembles. These quantities are spacing distributions…

Mathematical Physics · Physics 2026-04-10 Peter J. Forrester , Anas A. Rahman , Bo-Jian Shen

A fundamental problem in Bayesian inference and statistical machine learning is to efficiently sample from multimodal distributions. Due to metastability, multimodal distributions are difficult to sample using standard Markov chain Monte…

Machine Learning · Statistics 2019-05-27 Yulong Lu , Jianfeng Lu , James Nolen

We derive a unified stochastic picture for the duality of a resampling-selection model with a branching-coalescing particle process (cf. http://www.ams.org/mathscinet-getitem?mr=MR2123250) and for the self-duality of Feller's branching…

Probability · Mathematics 2009-04-16 Roland Alkemper , Martin Hutzenthaler

While studying gradient dynamical systems (DSs), Morse introduced the idea of encoding the qualitative behavior of a DS into a graph. Smale later refined Morse's idea and extended it to Axiom-A diffeomorphisms on manifolds. In Smale's…

Dynamical Systems · Mathematics 2025-02-25 Roberto De Leo , James A. Yorke

Continuous-time birth-death-shift (BDS) processes are frequently used in stochastic modeling, with many applications in ecology and epidemiology. In particular, such processes can model evolutionary dynamics of transposable elements -…

Methodology · Statistics 2014-12-02 Jason Xu , Peter Guttorp , Midori Kato-Maeda , Vladimir N. Minin

We investigate certain properties of degenerate Feller processes that are killed when exiting a relatively compact set. Our main result provides general conditions ensuring that such a process possesses a (possibly non unique) quasi…

Probability · Mathematics 2024-08-21 Michel Benaïm , Nicolas Champagnat , William Oçafrain , Denis Villemonais
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