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Biology-derived algorithms are an important part of computational sciences, which are essential to many scientific disciplines and engineering applications. Many computational methods are derived from or based on the analogy to natural…

Optimization and Control · Mathematics 2010-03-10 Xin-She Yang

The profile of research software engineering has been greatly enhanced by developments at institutions around the world to form groups and communities that can support effective, sustainable development of research software. We observe,…

Software Engineering · Computer Science 2019-08-07 Jeremy Cohen , Daniel S. Katz , Michelle Barker , Robert Haines , Neil Chue Hong

Recent years have seen rapid progress at the intersection between causality and machine learning. Motivated by scientific applications involving high-dimensional data, in particular in biomedicine, we propose a deep neural architecture for…

Machine Learning · Computer Science 2022-12-12 Kai Lagemann , Christian Lagemann , Bernd Taschler , Sach Mukherjee

Across the life sciences, an ongoing effort over the last 50 years has made data and methods more reproducible and transparent. This openness has led to transformative insights and vastly accelerated scientific progress. For example,…

Neurons and Cognition · Quantitative Biology 2026-02-25 Colleen J. Gillon , Cody Baker , Ryan Ly , Edoardo Balzani , Bingni W. Brunton , Manuel Schottdorf , Satrajit Ghosh , Nima Dehghani

In this paper, we consider to what degree the structure of a linear system is determined by the system's input/output behavior. The structure of a linear system is a directed graph where the vertices represent the variables in the system…

Optimization and Control · Mathematics 2011-09-19 Remco Bras

A primary motivation for our research in Digital Ecosystems is the desire to exploit the self-organising properties of biological ecosystems. Ecosystems are thought to be robust, scalable architectures that can automatically solve complex,…

Neural and Evolutionary Computing · Computer Science 2016-11-18 G. Briscoe , S. Sadedin , G. Paperin

To analyze the evolutionary emergence of structural complexity in physical processes we introduce a general, but tractable, model of objects that interact to produce new objects. Since the objects--\emph{$epsilon$-machines}--have well…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 James P. Crutchfield , Olof Gornerup

Clinicians decisions are becoming more and more evidence-based meaning in no other field the big data analytics so promising as in healthcare. Due to the sheer size and availability of healthcare data, big data analytics has revolutionized…

Other Statistics · Statistics 2020-04-21 Arshia Rehman , Saeeda Naz , Imran Razzak

Physics is a field of science that has traditionally used the scientific method to answer questions about why natural phenomena occur and to make testable models that explain the phenomena. Discovering equations, laws and principles that…

The popularity of learning from data with machine learning and neural networks has lead to the creation of many new datasets for almost every problem domain. However, even within a single domain, these datasets are often collected with…

Machine Learning · Computer Science 2023-02-06 William C. Sleeman , Rishabh Kapoor , Preetam Ghosh

Protein dynamics underlie many biological functions, yet remain difficult to characterize due to the high computational cost of molecular dynamics simulations and the scarcity of dynamic structural data. This survey reviews recent advances…

Biomolecules · Quantitative Biology 2026-04-29 Haocheng Tang , Liang Shi , Ya-Shi Zhang , Xixian Liu , Jian Tang , Jiarui Lu

Cognitive Science has profoundly shaped disciplines such as Artificial Intelligence (AI), Philosophy, Psychology, Neuroscience, Linguistics, and Culture. Many breakthroughs in AI trace their roots to cognitive theories, while AI itself has…

Artificial Intelligence · Computer Science 2025-08-29 Rui Mao , Qian Liu , Xiao Li , Erik Cambria , Amir Hussain

The advent of molecular biology has led to the identification of definitive causative factors for a number of diseases, most of which are monogenic. Causes for most common diseases across the population, however, seem elusive and cannot be…

Quantitative Methods · Quantitative Biology 2013-10-03 Sepehr Ehsani

Causality and causal inference have emerged as core research areas at the interface of modern statistics and domains including biomedical sciences, social sciences, computer science, and beyond. The field's inherently interdisciplinary…

Methodology · Statistics 2025-08-26 Carlos Cinelli , Avi Feller , Guido Imbens , Edward Kennedy , Sara Magliacane , Jose Zubizarreta

Cells with the same genome can exist in different phenotypes. and can change between distinct phenotypes when subject to specific stimuli and microenvironments. Some examples include cell differentiation during development, reprogramming…

Quantitative Methods · Quantitative Biology 2022-09-28 Jianhua Xing

To flourish in the new data-intensive environment of 21st century science, we need to evolve new skills. These can be expressed in terms of the systemized framework that formed the basis of mediaeval education - the trivium (logic, grammar,…

Instrumentation and Methods for Astrophysics · Physics 2015-05-28 Matthew J. Graham

A fundamental question in the field of social studies of science is how research fields emerge, grow and decline over time and space. This study confronts this question here by developing an inductive analysis of emerging research fields…

General Economics · Economics 2018-07-23 Mario Coccia

Human-computer interaction relies on mouse/touchpad, keyboard, and screen, but tools have recently been developed that engage sound, smell, touch, muscular resistance, voice dialogue, balance, and multiple senses at once. How might these…

Human-Computer Interaction · Computer Science 2022-04-26 Gwynn Sturdevant , A. Jonathan R. Godfrey , Andrew Gelman
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