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Phylogenetic networks are often constructed by merging multiple conflicting phylogenetic signals into a directed acyclic graph. It is interesting to explore whether a network constructed in this way induces biologically-relevant…

Populations and Evolution · Quantitative Biology 2017-07-13 Steven Kelk , Fabio Pardi , Celine Scornavacca , Leo van Iersel

Most real networks are characterized by connectivity patterns that evolve in time following complex, non-Markovian, dynamics. Here we investigate the impact of this ubiquitous feature by studying the Susceptible-Infected-Recovered (SIR) and…

Physics and Society · Physics 2016-01-20 Kaiyuan Sun , Andrea Baronchelli , Nicola Perra

The network reconstruction task aims to estimate a complex system's structure from various data sources such as time series, snapshots, or interaction counts. Recent work has examined this problem in networks whose relationships involve…

Social and Information Networks · Computer Science 2023-12-05 Simon Lizotte , Jean-Gabriel Young , Antoine Allard

The SIS (susceptible-infected-susceptible) epidemic model on an arbitrary network, without making approximations, is a $2^n$-state Markov chain with a unique absorbing state (the all-healthy state). This makes analysis of the SIS model and,…

Social and Information Networks · Computer Science 2019-01-21 Navid Azizan Ruhi , Christos Thrampoulidis , Babak Hassibi

We propose a new paradigm to design a network-based self-adaptive epidemic model that relies on the interplay between the network and its line graph. We implement this proposal on a Susceptible-Infected-Susceptible model in which both nodes…

Adaptation and Self-Organizing Systems · Physics 2024-03-05 Paolo Bartesaghi , Gian Paolo Clemente , Rosanna Grassi

We study the Susceptible-Infectious-Susceptible (SIS) model on arbitrary networks. The well-established pair approximation treats neighboring pairs of nodes exactly while making a mean field approximation for the rest of the network. We…

Social and Information Networks · Computer Science 2026-05-05 George Cantwell , Cristopher Moore

Designing reliable networks consists in finding topological structures, which are able to successfully carry out desired processes and operations. When this set of activities performed within a network are unknown and the only available…

Optimization and Control · Mathematics 2014-09-22 Stefano Nasini

Node-connectivity augmentation is a fundamental network design problem. We are given a $k$-node connected graph $G$ together with an additional set of links, and the goal is to add a cheap subset of links to $G$ to make it $(k+1)$-node…

Data Structures and Algorithms · Computer Science 2023-11-29 Waldo Galvez , Dylan Hyatt-Denesik , Afrouz Jabal Ameli , Laura Sanita

In this paper, we study an adaptive spatial network. We consider an SIS (susceptible-infectedsusceptible) epidemic on the network, with a link/contact rewiring process constrained by spatial proximity. In particular, we assume that…

Populations and Evolution · Quantitative Biology 2016-11-25 P. Rattana , L. Berthouze , I. Z. Kiss

Complex networks describe a wide range of systems in nature and society, much quoted examples including the cell, a network of chemicals linked by chemical reactions, or the Internet, a network of routers and computers connected by physical…

Statistical Mechanics · Physics 2016-08-31 Reka Albert , Albert-Laszlo Barabasi

Mathematical modeling of epidemic propagation on networks is extended to hypergraphs in order to account for both the community structure and the nonlinear dependence of the infection pressure on the number of infected neighbours. The exact…

Dynamical Systems · Mathematics 2016-10-31 Ágnes Bodó , Gyula Y. Katona , Péter L. Simon

The susceptible--infected--susceptible (SIS) epidemic process on complex networks can show metastability, resembling an endemic equilibrium. In a general setting, the metastable state may involve a large portion of the network, or it can be…

Physics and Society · Physics 2016-05-03 Faryad Darabi Sahneh , Aram Vajdi , Caterina Scoglio

The robustness of complex networks with dependencies has been studied in recent years. However, previous studies focused on the robustness of networks composed of dependency links without network topology. In this study, we will analyze the…

Physics and Society · Physics 2014-12-09 Yuansheng Lin , Daqing Li , Rui Kang , Shlomo Havlin

We study the problem of minimizing the (time) average security costs in large systems comprising many interdependent subsystems, where the state evolution is captured by a susceptible-infected-susceptible (SIS) model. The security costs…

Systems and Control · Electrical Eng. & Systems 2022-04-14 Van Sy Mai , Richard J. La , Abdella Battou

The influence of the network's structure on the dynamics of spreading processes has been extensively studied in the last decade. Important results that partially answer this question show a weak connection between the macroscopic behavior…

Physics and Society · Physics 2012-03-12 Daniel Smilkov , Ljupco Kocarev

Network reconstruction is a well-developed sub-field of network science, but it has only recently been applied to production networks, where nodes are firms and edges represent customer-supplier relationships. We review the literature that…

General Economics · Economics 2024-09-20 Luca Mungo , Alexandra Brintrup , Diego Garlaschelli , François Lafond

Real-data networks often appear to have strong modularity, or network-of-networks structure, in which subgraphs of various size and consistency occur. Finding the respective subgraph structure is of great importance, in particular for…

Physics and Society · Physics 2008-09-29 Mitrovic Marija , Bosiljka Tadic

Many models of virus propagation in Computer Networks inspired by {\bf SIS,SIR,}\\ {\bf SEIR}, etc. epidemic disease propagation mathematical models that can be found in the epidemiology field have been proposed in the last two decades. The…

Optimization and Control · Mathematics 2021-01-05 Carlos Rodriguez Lucatero

Inferring missing links or detecting spurious ones based on observed graphs, known as link prediction, is a long-standing challenge in graph data analysis. With the recent advances in deep learning, graph neural networks have been used for…

Social and Information Networks · Computer Science 2023-01-03 Xingping Xian , Tao Wu , Xiaoke Ma , Shaojie Qiao , Yabin Shao , Chao Wang , Lin Yuan , Yu Wu

We consider a class of random, weighted networks, obtained through a redefinition of patterns in an Hopfield-like model and, by performing percolation processes, we get information about topology and resilience properties of the networks…

Statistical Mechanics · Physics 2015-05-30 Elena Agliari , Claudia Cioli , Enore Guadagnini