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Clinical natural language processing requires methods that can address domain-specific challenges, such as complex medical terminology and clinical contexts. Recently, large language models (LLMs) have shown promise in this domain. Yet,…

Computation and Language · Computer Science 2025-01-28 Ran Xu , Hejie Cui , Yue Yu , Xuan Kan , Wenqi Shi , Yuchen Zhuang , Wei Jin , Joyce Ho , Carl Yang

Training data for text classification is often limited in practice, especially for applications with many output classes or involving many related classification problems. This means classifiers must generalize from limited evidence, but…

Computation and Language · Computer Science 2020-05-19 Abhijit Mahabal , Jason Baldridge , Burcu Karagol Ayan , Vincent Perot , Dan Roth

Health related social media mining is a valuable apparatus for the early recognition of the diverse antagonistic medicinal conditions. Mostly, the existing methods are based on machine learning with knowledge-based learning. This working…

Computation and Language · Computer Science 2018-04-13 Vinayakumar R , Barathi Ganesh HB , Anand Kumar M , Soman KP

This study proposed an exhaustive stable/reproducible rule-mining algorithm combined to a classifier to generate both accurate and interpretable models. Our method first extracts rules (i.e., a conjunction of conditions about the values of…

Machine Learning · Computer Science 2017-07-03 Margaux Luck , Nicolas Pallet , Cecilia Damon

This paper presents a new semi-supervised framework with convolutional neural networks (CNNs) for text categorization. Unlike the previous approaches that rely on word embeddings, our method learns embeddings of small text regions from…

Machine Learning · Statistics 2015-11-03 Rie Johnson , Tong Zhang

Motivation: Biomedical named-entity normalization involves connecting biomedical entities with distinct database identifiers in order to facilitate data integration across various fields of biology. Existing systems for biomedical named…

Computation and Language · Computer Science 2023-10-24 Zainab Awan , Tim Kahlke , Peter Ralph , Paul Kennedy

Hand-crafted features based on linguistic and domain-knowledge play crucial role in determining the performance of disease name recognition systems. Such methods are further limited by the scope of these features or in other words, their…

Computation and Language · Computer Science 2016-07-01 Sunil Kumar Sahu , Ashish Anand

The prediction of disease risk factors can screen vulnerable groups for effective prevention and treatment, so as to reduce their morbidity and mortality. Machine learning has a great demand for high-quality labeling information, and…

Machine Learning · Computer Science 2024-06-26 Yang Lin , Muqing Li , Ziyi Zhu , Yinqiu Feng , Lingxi Xiao , Zexi Chen

Clinical notes are text documents that are created by clinicians for each patient encounter. They are typically accompanied by medical codes, which describe the diagnosis and treatment. Annotating these codes is labor intensive and error…

Computation and Language · Computer Science 2018-04-18 James Mullenbach , Sarah Wiegreffe , Jon Duke , Jimeng Sun , Jacob Eisenstein

The exponential growth of data generated on the Internet in the current information age is a driving force for the digital economy. Extraction of information is the major value in an accumulated big data. Big data dependency on statistical…

In this paper, we investigate dynamic feature selection within multivariate time-series scenario, a common occurrence in clinical prediction monitoring where each feature corresponds to a bio-test result. Many existing feature selection…

Machine Learning · Computer Science 2024-05-31 Yutong Chen , Jiandong Gao , Ji Wu

The question we answer with this work is: can we convert a text document into an image to exploit best image classification models to classify documents? To answer this question we present a novel text classification method which converts a…

Computer Vision and Pattern Recognition · Computer Science 2018-09-03 Shah Nawaz , Alessandro Calefati , Muhammad Kamran Janjua , Ignazio Gallo

In this work, we consider the medical concept normalization problem, i.e., the problem of mapping a disease mention in free-form text to a concept in a controlled vocabulary, usually to the standard thesaurus in the Unified Medical Language…

Computation and Language · Computer Science 2018-11-30 Elena Tutubalina , Zulfat Miftahutdinov , Sergey Nikolenko , Valentin Malykh

Recent multi-modal contrastive learning models have demonstrated the ability to learn an embedding space suitable for building strong vision classifiers, by leveraging the rich information in large-scale image-caption datasets. Our work…

Machine Learning · Computer Science 2023-02-09 Yuhui Zhang , Jeff Z. HaoChen , Shih-Cheng Huang , Kuan-Chieh Wang , James Zou , Serena Yeung

We propose a unified optimization framework that combines neural networks with dictionary learning to model complex interactions between resting state functional MRI and behavioral data. The dictionary learning objective decomposes patient…

Machine Learning · Computer Science 2024-11-21 Niharika Shimona D'Souza , Mary Beth Nebel , Nicholas Wymbs , Stewart Mostofsky , Archana Venkataraman

The application of deep learning-based architecture has seen a tremendous rise in recent years. For example, medical image classification using deep learning achieved breakthrough results. Convolutional Neural Networks (CNNs) are…

Computer Vision and Pattern Recognition · Computer Science 2024-10-23 Ganga Prasad Basyal , David Zeng , Bhaskar Pm Rimal

In this work, we consider the medical concept normalization problem, i.e., the problem of mapping a health-related entity mention in a free-form text to a concept in a controlled vocabulary, usually to the standard thesaurus in the Unified…

Computation and Language · Computer Science 2023-11-21 Zulfat Miftahutdinov , Elena Tutubalina

We investigate the automatic classification of patient discharge notes into standard disease labels. We find that Convolutional Neural Networks with Attention outperform previous algorithms used in this task, and suggest further areas for…

Machine Learning · Computer Science 2018-02-02 Amitabha Karmakar

Learning knowledge representation is an increasingly important technology applicable in many domain-specific machine learning problems. We discuss the effectiveness of traditional Link Prediction or Knowledge Graph Completion evaluation…

Artificial Intelligence · Computer Science 2020-02-24 Jianyu Liu , Hegler Tissot

Recent advances in machine learning for medical imaging have led to impressive increases in model complexity and overall capabilities. However, the ability to discern the precise information a machine learning method is using to make…

Machine Learning · Computer Science 2020-03-17 Tatiana Fountoukidou , Raphael Sznitman
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