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Objective: We investigate whether deep learning techniques for natural language processing (NLP) can be used efficiently for patient phenotyping. Patient phenotyping is a classification task for determining whether a patient has a medical…

Mining relationships between treatment(s) and medical problem(s) is vital in the biomedical domain. This helps in various applications, such as decision support system, safety surveillance, and new treatment discovery. We propose a deep…

Machine Learning · Computer Science 2018-07-02 Veera Raghavendra Chikka , Kamalakar Karlapalem

Predicting diagnoses from Electronic Health Records (EHRs) is an important medical application of multi-label learning. We propose a convolutional residual model for multi-label classification from doctor notes in EHR data. A given patient…

Machine Learning · Statistics 2018-08-10 Xinyuan Zhang , Ricardo Henao , Zhe Gan , Yitong Li , Lawrence Carin

Clinical trials are a systematic endeavor to assess the safety and efficacy of new drugs or treatments. Conducting such trials typically demands significant financial investment and meticulous planning, highlighting the need for accurate…

Machine Learning · Computer Science 2025-11-03 Tien Huu Do , Antoine Masquelier , Nae Eoun Lee , Jonathan Crowther

Learning to represent free text is a core task in many clinical machine learning (ML) applications, as clinical text contains observations and plans not otherwise available for inference. State-of-the-art methods use large language models…

Computation and Language · Computer Science 2023-01-30 Lecheng Kong , Christopher King , Bradley Fritz , Yixin Chen

The science of solving clinical problems by analyzing images generated in clinical practice is known as medical image analysis. The aim is to extract information in an effective and efficient manner for improved clinical diagnosis. The…

Computer Vision and Pattern Recognition · Computer Science 2019-05-22 Syed Muhammad Anwar , Muhammad Majid , Adnan Qayyum , Muhammad Awais , Majdi Alnowami , Muhammad Khurram Khan

Current Computer-Aided Diagnosis (CAD) methods mainly depend on medical images. The clinical information, which usually needs to be considered in practical clinical diagnosis, has not been fully employed in CAD. In this paper, we propose a…

Image and Video Processing · Electrical Eng. & Systems 2021-03-11 Songxiao Yang , Xiabi Liu , Zhongshu Zheng , Wei Wang , Xiaohong Ma

International Classification of Diseases (ICD) are the de facto codes used globally for clinical coding. These codes enable healthcare providers to claim reimbursement and facilitate efficient storage and retrieval of diagnostic…

Computation and Language · Computer Science 2022-02-22 Pavithra Rajendran , Alexandros Zenonos , Josh Spear , Rebecca Pope

Text clustering serves as a fundamental technique for organizing and interpreting unstructured textual data, particularly in contexts where manual annotation is prohibitively costly. With the rapid advancement of Large Language Models…

Computation and Language · Computer Science 2025-10-08 Chen Huang , Guoxiu He

This study investigates a hybrid method for text classification that integrates deep feature extraction from large language models, multi-scale fusion through feature pyramids, and structured modeling with graph neural networks to enhance…

Computation and Language · Computer Science 2025-11-11 Xiangchen Song , Yulin Huang , Jinxu Guo , Yuchen Liu , Yaxuan Luan

The detection and normalization of diseases in biomedical texts are key biomedical natural language processing tasks. Disease names need not only be identified, but also normalized or linked to clinical taxonomies describing diseases such…

Computation and Language · Computer Science 2020-10-27 Dhruba Pujary , Camilo Thorne , Wilker Aziz

In recent years extracting relevant information from biomedical and clinical texts such as research articles, discharge summaries, or electronic health records have been a subject of many research efforts and shared challenges. Relation…

Computation and Language · Computer Science 2016-07-01 Sunil Kumar Sahu , Ashish Anand , Krishnadev Oruganty , Mahanandeeshwar Gattu

Publications in the life sciences are characterized by a large technical vocabulary, with many lexical and semantic variations for expressing the same concept. Towards addressing the problem of relevance in biomedical literature search, we…

Information Retrieval · Computer Science 2018-03-01 Sunil Mohan , Nicolas Fiorini , Sun Kim , Zhiyong Lu

Text classification helps analyse texts for semantic meaning and relevance, by mapping the words against this hierarchy. An analysis of various types of texts is invaluable to understanding both their semantic meaning, as well as their…

Machine Learning · Computer Science 2022-11-16 Chaitanya Chadha , Vandit Gupta , Deepak Gupta , Ashish Khanna

Experimental methods for estimating the impacts of text on human evaluation have been widely used in the social sciences. However, researchers in experimental settings are usually limited to testing a small number of pre-specified text…

Computation and Language · Computer Science 2024-12-04 Megan Ayers , Luke Sanford , Margaret Roberts , Eddie Yang

Deep learning models for medical data are typically trained using task specific objectives that encourage representations to collapse onto a small number of discriminative directions. While effective for individual prediction problems, this…

Machine Learning · Computer Science 2026-02-10 Yuanyun Zhang , Mingxuan Zhang , Siyuan Li , Zihan Wang , Haoran Chen , Wenbo Zhou , Shi Li

Natural Language Processing (NLP) is an important branch of artificial intelligence that studies how to enable computers to understand, process, and generate human language. Text classification is a fundamental task in NLP, which aims to…

Computation and Language · Computer Science 2024-03-18 Xiaonan Xu , Zheng Xu , Zhipeng Ling , Zhengyu Jin , ShuQian Du

Classifying large scale networks into several categories and distinguishing them according to their fine structures is of great importance with several applications in real life. However, most studies of complex networks focus on properties…

Computer Vision and Pattern Recognition · Computer Science 2022-09-07 Ruyue Xin , Jiang Zhang , Yitong Shao

The Classification of medical images and illustrations in the literature aims to label a medical image according to the modality it was produced or label an illustration according to its production attributes. It is an essential and…

Computer Vision and Pattern Recognition · Computer Science 2017-06-29 Jianpeng Zhang , Yong Xia , Qi Wu , Yutong Xie

Convolutional neural network (CNN) is a neural network that can make use of the internal structure of data such as the 2D structure of image data. This paper studies CNN on text categorization to exploit the 1D structure (namely, word…

Computation and Language · Computer Science 2015-03-27 Rie Johnson , Tong Zhang