Related papers: Using statistical encoding to achieve tree succinc…
We introduce the problem of computing a parsing where each phrase is of length at most $m$ and which minimizes the zeroth order entropy of parsing. Based on the recent theoretical results we devise a heuristic for this problem. The solution…
We define simple variants of zip trees, called zip-zip trees, which provide several advantages over zip trees, including overcoming a bias that favors smaller keys over larger ones. We analyze zip-zip trees theoretically and empirically,…
Sorting is a foundational problem in computer science that is typically employed on sequences or total orders. More recently, a more general form of sorting on partially ordered sets (or posets), where some pairs of elements are…
In grammar-based compression a string is represented by a context-free grammar, also called a straight-line program (SLP), that generates only that string. We refine a recent balancing result stating that one can transform an SLP of size…
Practical data structures for the edit-sensitive parsing (ESP) are proposed. Given a string S, its ESP tree is equivalent to a context-free grammar G generating just S, which is represented by a DAG. Using the succinct data structures for…
According to the circle-packing theorem, the packing efficiency of a hexagonal lattice is higher than an equivalent square tessellation. Consequently, in several contexts, hexagonally sampled images compared to their Cartesian counterparts…
We establish a novel bijective encoding that represents permutations as forests of decorated (or enriched) trees. This allows us to prove local convergence of uniform random permutations from substitution-closed classes satisfying a…
Suffix trees are one of the most versatile data structures in stringology, with many applications in bioinformatics. Their main drawback is their size, which can be tens of times larger than the input sequence. Much effort has been put into…
We present the High-speed Order-Preserving Encoder (HOPE) for in-memory search trees. HOPE is a fast dictionary-based compressor that encodes arbitrary keys while preserving their order. HOPE's approach is to identify common key patterns at…
In this paper we show how to use one or more assembled or partially assembled genome as the basis for a compressed full-text index of its readset. Specifically, we build a labelled tree by taking the assembled genome as a trunk and grafting…
A branch-and-bound (BB) tree certifies a dual bound on the value of an integer program. In this work, we introduce the tree compression problem (TCP): Given a BB tree T that certifies a dual bound, can we obtain a smaller tree with the same…
Sorted data is usually easier to compress than unsorted permutations of the same data. This motivates a simple compression scheme: specify the sorted permutation of the data along with a representation of the sorted data compressed…
Efficient methods for storing and querying are critical for scaling high-order n-gram language models to large corpora. We propose a language model based on compressed suffix trees, a representation that is highly compact and can be easily…
For $n$-vertex graphs with treewidth $k = O(n^{1/2-\epsilon})$ and an arbitrary $\epsilon>0$, we present a word-RAM algorithm to compute vertex separators using only $O(n)$ bits of working memory. As an application of our algorithm, we give…
The Burrows-Wheeler Transform (BWT) has been an essential tool in text compression and indexing. First introduced in 1994, it went on to provide the backbone for the first encoding of the classic suffix tree data structure in space close to…
We prime-encode the natural numbers via recursive factorisation, iterated to the exponents, generating a corpus of planar rooted trees equivalently represented as Dyck words. This forms a deterministic text endowed with internal rules.…
We give an algorithm that for an input n-vertex graph G and integer k>0, in time 2^[O(k)]n either outputs that the treewidth of G is larger than k, or gives a tree decomposition of G of width at most 5k+4. This is the first algorithm…
This study introduces a new method of visualizing complex tree structured objects. The usefulness of this method is illustrated in the context of detecting unexpected features in a data set of very large trees. The major contribution is a…
Discovering the latent structure from many observed variables is an important yet challenging learning task. Existing approaches for discovering latent structures often require the unknown number of hidden states as an input. In this paper,…
The retrieval problem is the problem of associating data with keys in a set. Formally, the data structure must store a function f: U ->{0,1}^r that has specified values on the elements of a given set S, a subset of U, |S|=n, but may have…