Related papers: A Domain Decomposition Method for the Poisson-Bolt…
In this paper, we apply the optimized Schwarz method to the two dimensional nonlinear Schr{\"o}dinger equation and extend this method to the simulation of Bose-Einstein condensates (Gross-Pitaevskii equation). We propose an extended version…
We propose a domain-decomposition pore-network method (DD-PNM) for modeling single-phase Stokes flow in porous media. The method combines the accuracy of finite-element discretizations on body-fitted meshes within pore subdomains with a…
The discretization of surface intrinsic PDEs has challenges that one might not face in the flat space. The closest point method (CPM) is an embedding method that represents surfaces using a function that maps points in the flat space to…
Poisson-Boltzmann (PB) theory is the classic approach to soft matter electrostatics which has been applied to numerous problems of physical chemistry and biophysics. Its essential limitations are the neglect of correlation effects and of…
For the Poisson equation posed in a domain containing a large number of polygonal perforations, we propose a low-dimensional coarse approximation space based on a coarse polygonal partitioning of the domain. Similarly to other multiscale…
We present an overlapping Schwarz decomposition algorithm for constrained quadratic programs (QPs). Schwarz algorithms have been traditionally used to solve linear algebra systems arising from partial differential equations, but we have…
In this paper, we revisit the nonoverlapping domain decomposition methods for solving elliptic problems with high contrast coefficients. Some interesting results are discovered. We find that the Dirichlet-Neumann algorithm and Robin-Robin…
The Poisson-Boltzmann equation (PBE) is a nonlinear elliptic PDE that arises in biomolecular modeling and is a fundamental tool for structural biology. It is used to calculate electrostatic potentials around an ensemble of fixed charges…
The Poisson--Boltzmann equation is widely used to model electrostatics in molecular systems. Available software packages solve it using finite difference, finite element, and boundary element methods, where the latter is attractive due to…
The modern design of industrial structures leads to very complex simulations characterized by nonlinearities, high heterogeneities, tortuous geometries... Whatever the modelization may be, such an analysis leads to the solution to a family…
In this paper we are interested in the "fast path" fracture and we aim to use global-in-time, nonoverlapping domain decomposition methods to model flow and transport problems in a porous medium containing such a fracture. We consider a…
Schwarz methods use a decomposition of the computational domain into subdomains and need to put boundary conditions on the subdomain boundaries. In domain truncation one restricts the unbounded domain to a bounded computational domain and…
The Polarizable Continuum Model (PCM) can be used in conjunction with Density Functional Theory (DFT) and its time-dependent extension (TDDFT) to simulate the electronic and optical properties of molecules and nanoparticles immersed in a…
We investigate the parallel one-level overlapping Schwarz method for solving finite element discretization of high-frequency Helmholtz equations. The resulting linear systems are large, indefinite, ill-conditioned, and complex-valued. We…
In this paper, we are interested in scalable Domain Decomposition Methods (DDM). To this end, we introduce and study a new Coarse Space Correction algorithm for Optimized Schwarz Methods(OSM) : the DCS-DGLC algorithm. The main idea is to…
We discuss parallel (additive) and sequential (multiplicative) variants of overlapping Schwarz methods for the Helmholtz equation in $\mathbb{R}^d$, with large real wavenumber and smooth variable wave speed. The radiation condition is…
Wereportonanewmultiscalemethodapproachforthestudyofsystemswith wide separation of short-range forces acting on short time scales and long-range forces acting on much slower scales. We consider the case of the Poisson-Boltzmann equation that…
Saturated vapor condensation on the homogeneous and heterogeneous sub-cooled wall under gravity was numerically simulated by the improved pseudo-potential phase-change multiple-relaxation-time lattice Boltzmann (LB) method. Firstly, the…
We investigate the application of the additive overlapping Schwarz domain decomposition method as a preconditioner for the large sparse linear systems arising in graph-based nonlinear least-squares problems, specifically the pose-graph…
A new protocol for linearization of the Poisson-Boltzmann equation is proposed and the resultant electrostatic equation coincides formally with the Debye-Huckel equation, the solution of which is well known for many electrostatic problems.…