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In clinical practice, regions of interest in medical imaging often need to be identified through a process of precise image segmentation. The quality of this image segmentation step critically affects the subsequent clinical assessment of…

Image and Video Processing · Electrical Eng. & Systems 2021-03-23 João B. S. Carvalho , João A. Santinha , Đorđe Miladinović , Joachim M. Buhmann

We systematically evaluate a Deep Learning (DL) method in a 3D medical image segmentation task. Our segmentation method is integrated into the radiosurgery treatment process and directly impacts the clinical workflow. With our method, we…

Image and Video Processing · Electrical Eng. & Systems 2021-08-24 Boris Shirokikh , Alexandra Dalechina , Alexey Shevtsov , Egor Krivov , Valery Kostjuchenko , Amayak Durgaryan , Mikhail Galkin , Andrey Golanov , Mikhail Belyaev

U-Net is a widely adopted neural network in the domain of medical image segmentation. Despite its quick embracement by the medical imaging community, its performance suffers on complicated datasets. The problem can be ascribed to its simple…

Image and Video Processing · Electrical Eng. & Systems 2022-06-07 Mehreen Mubashar , Hazrat Ali , Christer Gronlund , Shoaib Azmat

The MR-Linac can enable real-time radiotherapy adaptation. However, real-time image acquisition is restricted to 2D to obtain sufficient spatial resolution, hindering accurate 3D segmentation. By reducing spatial resolution fast 3D imaging…

Medical Physics · Physics 2023-10-18 Samuel Fransson , David Tilly , Robin Strand

We propose a novel automatic method for accurate segmentation of the prostate in T2-weighted magnetic resonance imaging (MRI). Our method is based on convolutional neural networks (CNNs). Because of the large variability in the shape, size,…

Image and Video Processing · Electrical Eng. & Systems 2020-01-01 Davood Karimi , Golnoosh Samei , Yanan Shao , Septimiu Salcudean

Automatic prostate segmentation in transrectal ultrasound (TRUS) images is of essential importance for image-guided prostate interventions and treatment planning. However, developing such automatic solutions remains very challenging due to…

Image and Video Processing · Electrical Eng. & Systems 2024-03-05 Yi Wang , Haoran Dou , Xiaowei Hu , Lei Zhu , Xin Yang , Ming Xu , Jing Qin , Pheng-Ann Heng , Tianfu Wang , Dong Ni

Segmentation is a crucial step in microscopy image analysis. Numerous approaches have been developed over the past years, ranging from classical segmentation algorithms to advanced deep learning models. While U-Net remains one of the most…

Image and Video Processing · Electrical Eng. & Systems 2024-09-26 Illia Tsiporenko , Pavel Chizhov , Dmytro Fishman

Vision transformers are effective deep learning models for vision tasks, including medical image segmentation. However, they lack efficiency and translational invariance, unlike convolutional neural networks (CNNs). To model long-range…

Image and Video Processing · Electrical Eng. & Systems 2023-08-15 Liam Chalcroft , Ruben Lourenço Pereira , Mikael Brudfors , Andrew S. Kayser , Mark D'Esposito , Cathy J. Price , Ioannis Pappas , John Ashburner

Today, deep convolutional neural networks (CNNs) have demonstrated state of the art performance for supervised medical image segmentation, across various imaging modalities and tasks. Despite early success, segmentation networks may still…

Computer Vision and Pattern Recognition · Computer Science 2020-11-24 Rosana El Jurdi , Caroline Petitjean , Paul Honeine , Veronika Cheplygina , Fahed Abdallah

Accurate segmentation of the prostate from magnetic resonance (MR) images provides useful information for prostate cancer diagnosis and treatment. However, automated prostate segmentation from 3D MR images still faces several challenges.…

Computer Vision and Pattern Recognition · Computer Science 2019-08-16 Qikui Zhu , Bo Du , Pingkun Yan

There is large consent that successful training of deep networks requires many thousand annotated training samples. In this paper, we present a network and training strategy that relies on the strong use of data augmentation to use the…

Computer Vision and Pattern Recognition · Computer Science 2015-05-19 Olaf Ronneberger , Philipp Fischer , Thomas Brox

Uncertainty quantification is vital for safety-critical Deep Learning applications like medical image segmentation. We introduce BA U-Net, an uncertainty-aware model for MRI segmentation that integrates Bayesian Neural Networks with…

Image and Video Processing · Electrical Eng. & Systems 2024-09-17 Lohith Konathala

Manually inspecting polyps from a colonoscopy for colorectal cancer or performing a biopsy on skin lesions for skin cancer are time-consuming, laborious, and complex procedures. Automatic medical image segmentation aims to expedite this…

Image and Video Processing · Electrical Eng. & Systems 2023-06-27 Akib Mohammed Khan , Alif Ashrafee , Fahim Shahriar Khan , Md. Bakhtiar Hasan , Md. Hasanul Kabir

Accurate segmentation of the left atrium (LA) from cardiac MRI is critical for guiding atrial fibrillation (AF) ablation and constructing biophysical cardiac models. Manual delineation is time-consuming, observer-dependent, and impractical…

Image and Video Processing · Electrical Eng. & Systems 2025-11-08 Fatemeh Hosseinabadi , Seyedhassan Sharifi

Segmentation of images is a long-standing challenge in medical AI. This is mainly due to the fact that training a neural network to perform image segmentation requires a significant number of pixel-level annotated data, which is often…

Computer Vision and Pattern Recognition · Computer Science 2021-08-26 Himashi Peiris , Zhaolin Chen , Gary Egan , Mehrtash Harandi

Automatic lymph node (LN) segmentation and detection for cancer staging are critical. In clinical practice, computed tomography (CT) and positron emission tomography (PET) imaging detect abnormal LNs. Despite its low contrast and variety in…

Image and Video Processing · Electrical Eng. & Systems 2022-12-23 Al-Akhir Nayan , Boonserm Kijsirikul , Yuji Iwahori

Tissue loss in the hippocampi has been heavily correlated with the progression of Alzheimer's Disease (AD). The shape and structure of the hippocampus are important factors in terms of early AD diagnosis and prognosis by clinicians.…

Image and Video Processing · Electrical Eng. & Systems 2022-03-03 Lukas Folle , Sulaiman Vesal , Nishant Ravikumar , Andreas Maier

Segmentation for tracking surgical instruments plays an important role in robot-assisted surgery. Segmentation of surgical instruments contributes to capturing accurate spatial information for tracking. In this paper, a novel network,…

Computer Vision and Pattern Recognition · Computer Science 2019-09-20 Zhen-Liang Ni , Gui-Bin Bian , Xiao-Liang Xie , Zeng-Guang Hou , Xiao-Hu Zhou , Yan-Jie Zhou

In recent years, deep learning-based networks have achieved state-of-the-art performance in medical image segmentation. Among the existing networks, U-Net has been successfully applied on medical image segmentation. In this paper, we…

Image and Video Processing · Electrical Eng. & Systems 2019-09-04 Reza Azad , Maryam Asadi-Aghbolaghi , Mahmood Fathy , Sergio Escalera

Macular holes are a common eye condition which result in visual impairment. We look at the application of deep convolutional neural networks to the problem of macular hole segmentation. We use the 3D U-Net architecture as a basis and…

Image and Video Processing · Electrical Eng. & Systems 2021-04-08 Jonathan Frawley , Chris G. Willcocks , Maged Habib , Caspar Geenen , David H. Steel , Boguslaw Obara