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We introduce an unsupervised motion-compensated reconstruction scheme for high-resolution free-breathing pulmonary MRI. We model the image frames in the time series as the deformed version of the 3D template image volume. We assume the…

Image and Video Processing · Electrical Eng. & Systems 2022-07-13 Qing Zou , Luis A. Torres , Sean B. Fain , Nara S. Higano , Alister J. Bates , Mathews Jacob

Purpose: To develop a reconstruction framework for 3D real-time cine cardiovascular magnetic resonance (CMR) from highly undersampled data without requiring fully sampled training datasets. Methods: We developed a multi-dynamic low-rank…

Image and Video Processing · Electrical Eng. & Systems 2025-12-08 Chong Chen , Marc Vornehm , Zhenyu Bu , Preethi Chandrasekaran , Muhammad A. Sultan , Syed M. Arshad , Yingmin Liu , Yuchi Han , Rizwan Ahmad

Based on a 3D pre-treatment magnetic resonance (MR) scan, we developed DREME-MR to jointly reconstruct the reference patient anatomy and a data-driven, patient-specific cardiorespiratory motion model. Via a motion encoder simultaneously…

Medical Physics · Physics 2025-07-04 Hua-Chieh Shao , Xiaoxue Qian , Guoping Xu , Can Wu , Ricardo Otazo , Jie Deng , You Zhang

The main focus of this work is a novel framework for the joint reconstruction and segmentation of parallel MRI (PMRI) brain data. We introduce an image domain deep network for calibrationless recovery of undersampled PMRI data. The proposed…

Image and Video Processing · Electrical Eng. & Systems 2021-02-03 Aniket Pramanik , Mathews Jacob

Deep learning (DL) has emerged as a tool for improving accelerated MRI reconstruction. A common strategy among DL methods is the physics-based approach, where a regularized iterative algorithm alternating between data consistency and a…

Image and Video Processing · Electrical Eng. & Systems 2020-07-03 Burhaneddin Yaman , Seyed Amir Hossein Hosseini , Steen Moeller , Jutta Ellermann , Kâmil Uǧurbil , Mehmet Akçakaya

Although deep learning (DL) has gained much popularity for accelerated magnetic resonance imaging (MRI), recent studies have shown that DL-based MRI reconstruction models could be oversensitive to tiny input perturbations (that are called…

Image and Video Processing · Electrical Eng. & Systems 2023-03-23 Hui Li , Jinghan Jia , Shijun Liang , Yuguang Yao , Saiprasad Ravishankar , Sijia Liu

As the popularity of deep learning (DL) in the field of magnetic resonance imaging (MRI) continues to rise, recent research has indicated that DL-based MRI reconstruction models might be excessively sensitive to minor input disturbances,…

Image and Video Processing · Electrical Eng. & Systems 2025-10-07 Shijun Liang , Van Hoang Minh Nguyen , Jinghan Jia , Ismail Alkhouri , Sijia Liu , Saiprasad Ravishankar

Purpose: To investigate motion compensated, self-supervised, model based deep learning (MBDL) as a method to reconstruct free breathing, 3D Pulmonary ultrashort echo time (UTE) acquisitions. Theory and Methods: A self-supervised eXtra…

Medical Physics · Physics 2022-10-11 Zachary Miller , Kevin Johnson

Low dose X-ray computed tomography (LDCT) is desirable for reduced patient dose. This work develops image reconstruction methods with deep learning (DL) regularization for LDCT. Our methods are based on unrolling of proximal…

Image and Video Processing · Electrical Eng. & Systems 2020-08-26 Qiaoqiao Ding , Gaoyu Chen , Xiaoqun Zhang , Qiu Huang , Hui Jiand Hao Gao

Functional MRI (fMRI) is commonly used for interpreting neural activities across the brain. Numerous accelerated fMRI techniques aim to provide improved spatiotemporal resolutions. Among these, simultaneous multi-slice (SMS) imaging has…

Image and Video Processing · Electrical Eng. & Systems 2021-05-11 Omer Burak Demirel , Burhaneddin Yaman , Logan Dowdle , Steen Moeller , Luca Vizioli , Essa Yacoub , John Strupp , Cheryl A. Olman , Kâmil Uğurbil , Mehmet Akçakaya

We present a novel learned image reconstruction method for accelerated cardiac MRI with multiple receiver coils based on deep convolutional neural networks (CNNs) and algorithm unrolling. In contrast to many existing learned MR image…

Image and Video Processing · Electrical Eng. & Systems 2024-10-08 Felix Frederik Zimmermann , Andreas Kofler

Background. Clinical parameters measured from gated single-photon emission computed tomography myocardial perfusion imaging (SPECT MPI) have value in predicting cardiac resynchronization therapy (CRT) patient outcomes, but still show…

Computer Vision and Pattern Recognition · Computer Science 2023-12-27 Kristoffer Larsena , Zhuo He , Chen Zhao , Xinwei Zhang , Quiying Sha , Claudio T Mesquitad , Diana Paeze , Ernest V. Garciaf , Jiangang Zou , Amalia Peix , Weihua Zhou

Deep learning (DL) has recently emerged to address the heavy storage and computation requirements of the baseline dictionary-matching (DM) for Magnetic Resonance Fingerprinting (MRF) reconstruction. Fed with non-iterated back-projected…

Computer Vision and Pattern Recognition · Computer Science 2019-02-28 Mohammad Golbabaee , Carolin M. Pirkl , Marion I. Menzel , Guido Buonincontri , Pedro A. Gómez

Cardiac MRI (CMRI) is a cornerstone imaging modality that provides in-depth insights into cardiac structure and function. Multi-contrast CMRI (MCCMRI), which acquires sequences with varying contrast weightings, significantly enhances…

Image and Video Processing · Electrical Eng. & Systems 2024-11-05 George Yiasemis , Nikita Moriakov , Jan-Jakob Sonke , Jonas Teuwen

Magnetic resonance imaging (MRI) is an essential diagnostic tool that suffers from prolonged scan times. Reconstruction methods can alleviate this limitation by recovering clinically usable images from accelerated acquisitions. In…

Image and Video Processing · Electrical Eng. & Systems 2023-01-09 Salman UH Dar , Şaban Öztürk , Muzaffer Özbey , Tolga Çukur

We introduce a model-based image reconstruction framework with a convolution neural network (CNN) based regularization prior. The proposed formulation provides a systematic approach for deriving deep architectures for inverse problems with…

Computer Vision and Pattern Recognition · Computer Science 2019-06-06 Hemant Kumar Aggarwal , Merry P. Mani , Mathews Jacob

Purpose: To develop a deep-learning-based image reconstruction framework for reproducible research in MRI. Methods: The BART toolbox offers a rich set of implementations of calibration and reconstruction algorithms for parallel imaging and…

Computer Vision and Pattern Recognition · Computer Science 2024-02-20 Moritz Blumenthal , Guanxiong Luo , Martin Schilling , H. Christian M. Holme , Martin Uecker

Purpose: To evaluate the quality of deep learning reconstruction for prospectively accelerated intraoperative magnetic resonance imaging (iMRI) during resective brain tumor surgery. Materials and Methods: Accelerated iMRI was performed…

High spatial and temporal resolution across the whole brain is essential to accurately resolve neural activities in fMRI. Therefore, accelerated imaging techniques target improved coverage with high spatio-temporal resolution. Simultaneous…

Image and Video Processing · Electrical Eng. & Systems 2021-05-13 Omer Burak Demirel , Burhaneddin Yaman , Logan Dowdle , Steen Moeller , Luca Vizioli , Essa Yacoub , John Strupp , Cheryl A. Olman , Kâmil Uğurbil , Mehmet Akçakaya

The accuracy of the information that can be extracted from electron diffraction patterns is often limited by the presence of optical distortions. Existing distortion characterization techniques typically require knowledge of the reciprocal…