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A mathematical model for emerging contaminants sorption in multispecies biofilms, based on a continuum approach and mass conservation principles is presented. Diffusion of contaminants within the biofilm is described using a…

Cell Behavior · Quantitative Biology 2017-06-15 Luigi Frunzo

In various areas of science, technology, environment protection, construction, it is very important to study processes of porous materials interaction with different substances in different aggregation states. From the point of view of…

Fluid Dynamics · Physics 2017-09-19 E. G. Nikonov , M. Pavluš , M. Popovičová

Two-dimensional simulations are used to explore topological transitions that occur during the formation of films grown from grains that are seeded on substrates. This is done for a relatively large range of the initial value $\Phi_s$ of the…

Materials Science · Physics 2022-01-21 Stoffel D. Janssens , David Vázquez-Cortés , Eliot Fried

A dissipative particle dynamics (DPD) model for the quantitative simulation of biofilm growth controlled by substrate (nutrient) consumption, advective and diffusive substrate transport, and hydrodynamic interactions with fluid flow…

Computational Physics · Physics 2018-08-03 Zhijie Xu , Paul Meakin , Alexandre Tartakovsky , Timothy. D. Scheibe

We propose a method for effectively upscaling incompressible viscous flow in large random polydispersed sphere packings: the emphasis of this method is on the determination of the forces applied on the solid particles by the fluid. Pore…

Soft Condensed Matter · Physics 2015-03-19 B. Chareyre , A. Cortis , E. Catalano , E. Barthélémy

Biofilms are ubiquitous macro-colonies of bacteria that develop at various interfaces (solid-liquid, solid-gas or liquid-gas). The formation of biofilms starts with the attachment of individual bacteria to an interface, where they…

Biological Physics · Physics 2016-11-03 Sarah Trinschek , Karin John , Uwe Thiele

In this article, two novel numerical methods have been developed for simulating fluid/porous particle interactions in three-dimensional (3D) Stokes flow. The Brinkman-Debye-Bueche model is adopted for the fluid flow inside the porous…

Computational Physics · Physics 2017-02-10 Aixia Guo , Tsorng-Whay Pan , Jiwen He , Roland Glowinski

In this paper we present the two-level homogenization of the flow in a deformable double-porous structure described at two characteristic scales. The higher level porosity associated with the mesoscopic structure is constituted by channels…

Computational Physics · Physics 2020-06-30 Eduard Rohan , Jana Turjanicová , Vladimír Lukeš

Biofilms, bacteria cells surrounded by a self-produced polymeric matrix, are common on medical devices and lead to many hospital infections. The biofilm lifecycle includes disassembly and dispersion, where bacteria clusters detach from the…

Quantitative Methods · Quantitative Biology 2026-05-18 Yuehui Xu , Jasmine A. F. Kreig , Zhuoran Wang , Elizabeth J. Stewart , Rayanne A. Luke , Sarah D. Olson

Understanding porous media properties and their scale dependence have been an active subject of research in the past several decades in hydrology, geosciences and petroleum engineering. The scale dependence of flow in porous media is…

Geophysics · Physics 2021-01-22 Misagh Esmaeilpour , Behzad Ghanbarian , Feng Liang , Hui-Hai Liu

Fluid flow through bimodal porous media, characterized by a distinct separation in pore size distribution, is critical in various scientific and engineering applications, including groundwater management, oil and gas production, and carbon…

Fluid Dynamics · Physics 2024-09-06 Yuhe Wang , Yating Wang

Microfiltration technology is a widely used engineering strategy for fresh water production and water treatment. The major concern in many applications is the formation of a biological fouling layer leading to increased hydraulic resistance…

Biological Physics · Physics 2021-04-12 V. Luongo , M. R. Mattei , L. Frunzo , B. D'Acunto , K. Gupta , S. Chellam , N. G. Cogan

A multiscale mathematical model describing the genesis and ecology of algal-bacterial photogranules and the metals biosorption on their solid matrix within a sequencing batch reactor (SBR) is presented. The granular biofilm is modelled as a…

Cell Behavior · Quantitative Biology 2023-01-31 F. Russo , A. Tenore , M. R. Mattei , L. Frunzo

In this work we consider how surface-adherent bacterial biofilm communities respond in flowing systems. We simulate the fluid-structure interaction and separation process using the immersed boundary method. In these simulations we model and…

Numerical Analysis · Mathematics 2013-02-18 Jason F. Hammond , Elizabeth J. Stewart , John G. Younger , Michael J. Solomon , David M. Bortz

Bacterial attachment to a fluid interface can lead to the formation of a film with physicochemical properties that evolve with time. We study the time evolution of interface (micro)mechanics for interfaces between oil and bacterial…

Soft Condensed Matter · Physics 2015-03-26 Liana Vaccari , Daniel Allan , Nima Sharifi-Mood , Aayush Singh , Robert Leheny , Kathleen Stebe

The paper provides a macro-microscopic coupled constitutive model for fluid-saturated porous media with respect to the compressibility of the solid skeleton, the real solid material and the fluid phase. The derivation of the model is…

Geophysics · Physics 2022-04-27 Jia-Yu Liang , Yue-Ming Li , Erich Bauer

We investigate a two-dimensional network simulator that model the dynamics of two-phase immiscible bulk flow where film flow can be neglected. We present a method for simulating the detailed dynamical process where the two phases are…

Condensed Matter · Physics 2007-05-23 Henning Arendt Knudsen , Eyvind Aker , Alex Hansen

Bacterial biofilms mechanically behave as viscoelastic media consisting of micron-sized bacteria crosslinked to a selfproduced network of extracellular polymeric substances (EPS) embedded in water. Structural principles for numerical…

One of the varieties of pores, often found in natural or artificial building materials, are the so-called blind pores of dead-end or saccate type. Three-dimensional model of such kind of pore has been developed in this work. This model has…

Fluid Dynamics · Physics 2017-08-22 Eduard G. Nikonov , Miron Pavluš , Mária Popovičová

Multicomponent multiphase reactive transport processes with dissolution-precipitation are widely encountered in energy and environment systems. A pore-scale two-phase multi-mixture model based on the lattice Boltzmann method (LBM) is…

Fluid Dynamics · Physics 2015-04-09 Li Chen , Qinjun Kang , Qing Tang , Bruce A. Robinson , Ya-Ling He , Wen-Quan Tao