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Discrete dynamic models are a powerful tool for the understanding and modeling of large biological networks. Although a lot of progress has been made in developing analysis tools for these models, there is still a need to find approaches…

Molecular Networks · Quantitative Biology 2013-06-14 Jorge G. T. Zañudo , Réka Albert

Social learning is widely observed in many species. Less experienced agents copy successful behaviors, exhibited by more experienced individuals. Nevertheless, the dynamical mechanisms behind this process remain largely unknown. Here we…

Dynamical Systems · Mathematics 2024-02-08 Carlos Calvo Tapia , Ivan Y. Tyukin , Valeriy A. Makarov Slizneva

Network motifs can capture basic interaction patterns and inform the functional properties of networks. However, real-world complex systems often have multiple types of relationships, which cannot be represented by a monolayer network. The…

Physics and Society · Physics 2019-03-06 Lu Zhong , Qingpeng Zhang , Dong Yang , Guanrong Chen , Shi Yu

Biological networks have evolved to be highly functional within uncertain environments while remaining extremely adaptable. One of the main contributors to the robustness and evolvability of biological networks is believed to be their…

Molecular Networks · Quantitative Biology 2008-02-14 Arend Hintze , Christoph Adami

Complex networks can often be decomposed into less complex sub-networks whose structures can give hints about the functional organization of the network as a whole. However, these structural motifs can only tell one part of the functional…

Molecular Networks · Quantitative Biology 2015-05-20 Jifeng Qian , Arend Hintze , Christoph Adami

Network motifs are the building blocks of complex networks and are significantly involved in the network dynamics such as information processing and local operations in the brain, biological marks for drug targets, identifying and…

Physics and Society · Physics 2023-04-25 Bnaya Gross , Shlomo Havlin , Baruch Barzel

Network motifs, the recurring regulatory structural patterns in networks, are able to self-organize to produce networks. Three major motifs, feedforward loop, single input modules and bi-fan are found in gene regulatory networks. The large…

Molecular Networks · Quantitative Biology 2007-05-23 Edwin Wang , Enrico Purisima

One of the most important concepts in biological network analysis is that of network motifs, which are patterns of interconnections that occur in a given network at a frequency higher than expected in a random network. In this work we are…

Discrete Mathematics · Computer Science 2020-05-29 Diego P Rubert , Eloi Araujo , Marco A Stefanes , Jens Stoye , Fábio V Martinez

Several natural and theoretical networks can be broken down into smaller portions, or subgraphs corresponding to neighborhoods. The more frequent of these neighborhoods can then be understood as motifs of the network, being therefore…

Physics and Society · Physics 2022-04-21 Guilherme S. Domingues , Eric K. Tokuda , Luciano da F. Costa

Scaling model capacity has been vital in the success of deep learning. For a typical network, necessary compute resources and training time grow dramatically with model size. Conditional computation is a promising way to increase the number…

Machine Learning · Computer Science 2018-11-14 Louis Kirsch , Julius Kunze , David Barber

We introduce a flexible setup allowing for a neural network to learn both its size and topology during the course of a standard gradient-based training. The resulting network has the structure of a graph tailored to the particular learning…

Machine Learning · Computer Science 2020-07-16 Romuald A. Janik , Aleksandra Nowak

The study of motifs in networks can help researchers uncover links between the structure and function of networks in biology, sociology, economics, and many other areas. Empirical studies of networks have identified feedback loops,…

Physics and Society · Physics 2021-05-12 Alice C. Schwarze , Mason A. Porter

Network structures are extremely important to the study of political science. Much of the data in its subfields are naturally represented as networks. This includes trade, diplomatic and conflict relationships. The social structure of…

Methodology · Statistics 2011-05-05 Drew Conway

Modular organization characterizes many complex networks occurring in nature, including the brain. In this paper we show that modular structure may be responsible for increasing the robustness of certain dynamical states of such systems. In…

Disordered Systems and Neural Networks · Physics 2015-05-27 Neeraj Pradhan , Subinay Dasgupta , Sitabhra Sinha

We study complex networks in which the nodes of the network are tagged with different colors depending on the functionality of the nodes (colored graphs), using information theory applied to the distribution of motifs in such networks. We…

Quantitative Methods · Quantitative Biology 2011-11-08 Christoph Adami , Jifeng Qian , Matthew Rupp , Arend Hintze

Generative mechanisms which lead to empirically observed structure of networked systems from diverse fields like biology, technology and social sciences form a very important part of study of complex networks. The structure of many…

Physics and Society · Physics 2015-12-03 Snehal M. Shekatkar , G. Ambika

Network motifs are overrepresented interconnection patterns found in real-world networks. What functional advantages may they offer for building complex systems? We show that most network motifs emerge from interconnections patterns that…

Systems and Control · Computer Science 2014-11-21 Marco Tulio Angulo , Yang-Yu Liu , Jean-Jacques Slotine

The large-scale structural ingredients of the brain and neural connectomes have been identified in recent years. These are, similar to the features found in many other real networks: the arrangement of brain regions into modules and the…

Neurons and Cognition · Quantitative Biology 2018-11-01 Gorka Zamora-López , Yuhan Chen , Gustavo Deco , Morten L. Kringelbach , Changsong Zhou

Studying the topology of so-called real networks, that is networks obtained from sociological or biological data for instance, has become a major field of interest in the last decade. One way to deal with it is to consider that networks are…

Applications · Statistics 2010-07-27 Etienne Birmele

It is common to use networks to encode the architecture of interactions between entities in complex systems in the physical, biological, social, and information sciences. To study the large-scale behavior of complex systems, it is useful to…

Social and Information Networks · Computer Science 2023-07-14 Hanbaek Lyu , Yacoub H. Kureh , Joshua Vendrow , Mason A. Porter