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We propose a unified framework for adaptive connection sampling in graph neural networks (GNNs) that generalizes existing stochastic regularization methods for training GNNs. The proposed framework not only alleviates over-smoothing and…

An easy-to-implement form of the Metropolis Algorithm is described which, unlike most standard techniques, is well suited to sampling from multi-modal distributions on spaces with moderate numbers of dimensions (order ten) in environments…

High Energy Physics - Phenomenology · Physics 2008-11-26 Benjamin C. Allanach , Christopher G. Lester

Graphical network inference is used in many fields such as genomics or ecology to infer the conditional independence structure between variables, from measurements of gene expression or species abundances for instance. In many practical…

Methodology · Statistics 2018-03-22 Geneviève Robin , Christophe Ambroise , Stéphane Robin

Random geometric graphs are random graph models defined on metric spaces. Such a model is defined by first sampling points from a metric space and then connecting each pair of sampled points with probability that depends on their distance,…

Machine Learning · Computer Science 2026-04-10 Han Huang , Pakawut Jiradilok , Elchanan Mossel

Motivated by applications of distributed linear estimation, distributed control and distributed optimization, we consider the question of designing linear iterative algorithms for computing the average of numbers in a network. Specifically,…

Information Theory · Computer Science 2009-08-28 Kyomin Jung , Devavrat Shah , Jinwoo Shin

Motivated by the physics of strings and branes, we develop a class of Markov chain Monte Carlo (MCMC) algorithms involving extended objects. Starting from a collection of parallel Metropolis-Hastings (MH) samplers, we place them on an…

Computational Physics · Physics 2017-09-13 Jonathan J. Heckman , Jeffrey G. Bernstein , Ben Vigoda

Graph neural networks have become a staple in problems addressing learning and analysis of data defined over graphs. However, several results suggest an inherent difficulty in extracting better performance by increasing the number of…

Machine Learning · Computer Science 2021-03-30 Diego Valsesia , Giulia Fracastoro , Enrico Magli

Gaussian graphical models (GGMs) are well-established tools for probabilistic exploration of dependence structures using precision matrices. We develop a Bayesian method to incorporate covariate information in this GGMs setup in a nonlinear…

Bayesian estimation of Gaussian graphical models has proven to be challenging because the conjugate prior distribution on the Gaussian precision matrix, the G-Wishart distribution, has a doubly intractable partition function. Recent…

Neurons and Cognition · Quantitative Biology 2014-09-10 Max Hinne , Alex Lenkoski , Tom Heskes , Marcel van Gerven

The generation of random graphs using edge swaps provides a reliable method to draw uniformly random samples of sets of graphs respecting some simple constraints, e.g. degree distributions. However, in general, it is not necessarily…

Social and Information Networks · Computer Science 2012-02-06 Lionel Tabourier , Camille Roth , Jean-Philippe Cointet

A class of random graph models is considered, combining features of exponential-family models and latent structure models, with the goal of retaining the strengths of both of them while reducing the weaknesses of each of them. An open…

Computation · Statistics 2020-07-21 Sergii Babkin , Jonathan Stewart , Xiaochen Long , Michael Schweinberger

Quantifying the complexity of large graphs requires measures that extend beyond predefined structural features and scale efficiently with graph size. This work adopts a generative perspective, modeling large networks as exchangeable graphs…

Information Theory · Computer Science 2025-03-14 Anda Skeja , Sofia C. Olhede

We give an efficient algorithm to generate a graph from a distribution $\epsilon$-close to $G(n,p)$, in the sense of total variation distance. In particular, if $p$ is represented with $O(\log n)$-bit accuracy, then, with high probability,…

Data Structures and Algorithms · Computer Science 2012-07-13 Antonio Blanca , Milena Mihail

I show how Markov chain sampling with the Metropolis-Hastings algorithm can be modified so as to take bigger steps when the distribution being sampled from has the characteristic that its density can be quickly recomputed for a new point if…

Statistics Theory · Mathematics 2007-06-13 Radford M. Neal

We introduce a class of generative network models that insert edges by connecting the starting and terminal vertices of a random walk on the network graph. Within the taxonomy of statistical network models, this class is distinguished by…

Methodology · Statistics 2018-07-11 Benjamin Bloem-Reddy , Peter Orbanz

This paper investigates the active sampling for estimation of approximately bandlimited graph signals. With the assistance of a graph filter, an approximately bandlimited graph signal can be formulated by a Gaussian random field over the…

Signal Processing · Electrical Eng. & Systems 2019-02-19 Sijie Lin , Xuan Xie , Hui Feng , Bo Hu

Consider a connected graph $G=(E,V)$ with $N=|V|$ vertices. The main purpose of this paper is to explore the question of uniform sampling of a subtree of $G$ with $n$ nodes, for some $n\leq N$ (the spanning tree case correspond to $n=N$,…

Probability · Mathematics 2023-04-03 Luis Fredes , Jean-Francois Marckert

We consider the problem of sampling from data defined on the nodes of a weighted graph, where the edge weights capture the data correlation structure. As shown recently, using spectral graph theory one can define a cut-off frequency for the…

Information Theory · Computer Science 2014-11-13 Ilan Shomorony , A. Salman Avestimehr

Sampling and interpolation have been extensively studied, in order to reconstruct or estimate the entire graph signal from the signal values on a subset of vertexes, of which most achievements are about continuous signals. While in a lot of…

Signal Processing · Electrical Eng. & Systems 2021-09-28 Wenwei Liu , Hui Feng , Kaixuan Wang , Feng Ji , Bo Hu

Random graphs with prescribed degree sequences have been widely used as a model of complex networks. Comparing an observed network to an ensemble of such graphs allows one to detect deviations from randomness in network properties. Here we…

Statistical Mechanics · Physics 2007-05-23 R. Milo , N. Kashtan , S. Itzkovitz , M. E. J. Newman , U. Alon