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Related papers: 3D Normal Coordinate Systems for Cortical Areas

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We describe coordinate systems adapted for the space between two surfaces, such as those delineating the highly folded cortex in mammalian brains. These systems are estimated in order to satisfy geometric priors, including streamline…

Optimization and Control · Mathematics 2019-11-20 Laurent Younes , Kwame S. Kutten , J. Tilak Ratnanather

Cortical surface analysis has gained increased prominence, given its potential implications for neurological and developmental disorders. Traditional vision diffusion models, while effective in generating natural images, present limitations…

Image and Video Processing · Electrical Eng. & Systems 2024-02-08 Zhenshan Xie , Simon Dahan , Logan Z. J. Williams , M. Jorge Cardoso , Emma C. Robinson

Charting cortical growth trajectories is of paramount importance for understanding brain development. However, such analysis necessitates the collection of longitudinal data, which can be challenging due to subject dropouts and failed…

Computer Vision and Pattern Recognition · Computer Science 2020-09-15 Peirong Liu , Zhengwang Wu , Gang Li , Pew-Thian Yap , Dinggang Shen

The human brain cortical layer has a convoluted morphology that is unique to each individual. Characterization of the cortical morphology is necessary in longitudinal studies of structural brain change, as well as in discriminating…

Neurons and Cognition · Quantitative Biology 2019-02-21 Sevil Maghsadhagh , Anders Eklund , Hamid Behjat

We present CortexODE, a deep learning framework for cortical surface reconstruction. CortexODE leverages neural ordinary differential equations (ODEs) to deform an input surface into a target shape by learning a diffeomorphic flow. The…

Image and Video Processing · Electrical Eng. & Systems 2022-09-13 Qiang Ma , Liu Li , Emma C. Robinson , Bernhard Kainz , Daniel Rueckert , Amir Alansary

The cerebral cortex performs higher-order brain functions and is thus implicated in a range of cognitive disorders. Current analysis of cortical variation is typically performed by fitting surface mesh models to inner and outer cortical…

Image and Video Processing · Electrical Eng. & Systems 2020-10-06 Samuel Budd , Prachi Patkee , Ana Baburamani , Mary Rutherford , Emma C. Robinson , Bernhard Kainz

Understanding the information processing roles of cortical circuits is an outstanding problem in neuroscience and artificial intelligence. The theoretical setting of Bayesian inference has been suggested as a framework for understanding…

Neurons and Cognition · Quantitative Biology 2018-08-06 Dileep George , Alexander Lavin , J. Swaroop Guntupalli , David Mely , Nick Hay , Miguel Lazaro-Gredilla

Encoding the distance between locations in space is essential for accurate navigation. Grid cells, a functional class of neurons in medial entorhinal cortex, are believed to support this computation. However, existing theories of how…

Neurons and Cognition · Quantitative Biology 2025-11-12 Pritipriya Dasbehera , Akshunna S. Dogra , William T. Redman

The human brain cortical layer has a convoluted morphology that is unique to each individual. Characterization of the cortical morphology is necessary in longitudinal studies of structural brain change, as well as in discriminating…

Computer Vision and Pattern Recognition · Computer Science 2018-10-25 Sevil Maghsadhagh , Mousa Shamsi , Anders Eklund , Hamid Behjat

Synthetic neuroimaging data can mitigate critical limitations of real-world datasets, including the scarcity of rare phenotypes, domain shifts across scanners, and insufficient longitudinal coverage. However, existing generative models…

Computer Vision and Pattern Recognition · Computer Science 2026-01-28 Fabian Bongratz , Yitong Li , Sama Elbaroudy , Christian Wachinger

Cortical folding pattern is a main characteristic of the geometry of the human brain which is formed by gyri (ridges) and sulci (grooves). Several biological hypotheses have suggested different mechanisms that attempt to explain the…

Biological Physics · Physics 2019-05-08 Amine Bohi , Xiaoyu Wang , Mariam Al Harrach , Mickael Dinomais , François Rousseau , Julien Lefèvre

Cortical surface registration is often driven by local geometric descriptors (e.g., sulcal depth and curvature). While this approach achieves geometric correspondence, it neglects the long-range wiring constraints imposed by white-matter…

Computer Vision and Pattern Recognition · Computer Science 2026-05-19 Yang Xiang , Martin Cole , Zhengwu Zhang

Brain morphometry study plays a fundamental role in neuroimaging research. In this work, we propose a novel method for brain surface morphometry analysis based on surface foliation theory. Given brain cortical surfaces with automatically…

Computational Geometry · Computer Science 2018-09-11 Chengfeng Wen , Na Lei , Ming Ma , Xin Qi , Wen Zhang , Yalin Wang , David Xianfeng Gu

The thickness of the cortical band is linked to various neurological and psychiatric conditions, and is often estimated through surface-based methods such as Freesurfer in MRI studies. The DiReCT method, which calculates cortical thickness…

Image and Video Processing · Electrical Eng. & Systems 2023-07-24 Richard McKinley , Christian Rummel

The universal scaling law of cortical morphology describes cortical folding as the covariance of average grey matter thickness, pial surface area, and exposed surface area. It applies for mammalian species, humans, and across lobes, however…

Neurons and Cognition · Quantitative Biology 2021-03-29 Karoline Leiberg , Christoforos Papasavvas , Yujiang Wang

We present cortical surface parcellation using spherical deep convolutional neural networks. Traditional multi-atlas cortical surface parcellation requires inter-subject surface registration using geometric features with high processing…

Optical sections of the cornea are obtained by illumination with a collimated beam expanded in a fan shape by a small rotary cylindrical lens. The light diffused from the cornea is observed by two cameras and processed in order to yield the…

Medical Physics · Physics 2007-05-23 Jose B. Almeida , Sandra Franco

Quantification of brain morphology has become an important cornerstone in understanding brain structure. Measures of cortical morphology such as thickness and surface area are frequently used to compare groups of subjects or characterise…

Neurons and Cognition · Quantitative Biology 2020-03-25 Yujiang Wang , Tobias Ludwig , Bethany Little , Joe H Necus , Gavin Winston , Sjoerd B Vos , Jane de Tisi , John S Duncan , Peter N Taylor , Bruno Mota

Neuronal circuits of the cerebral cortex are the structural basis of mammalian cognition. The same qualitative components and connectivity motifs are repeated across functionally specialized cortical areas and mammalian species, suggesting…

Neurons and Cognition · Quantitative Biology 2025-07-04 Arno Granier , Katharina A Wilmes , Mihai A Petrovici , Walter Senn

Although it seems counter-intuitive, categorical colours do not exist as external physical entities but are very much the product of our brains. Our cortical machinery segments the world and associate objects to specific colour terms, which…

Computer Vision and Pattern Recognition · Computer Science 2017-09-20 Arash Akbarinia , C. Alejandro Parraga
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