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Related papers: Recovering Trees with Convex Clustering

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Co-Clustering, the problem of simultaneously identifying clusters across multiple aspects of a data set, is a natural generalization of clustering to higher-order structured data. Recent convex formulations of bi-clustering and tensor…

Machine Learning · Statistics 2019-07-30 Michael Weylandt

Several real-world and abstract structures and systems are characterized by marked hierarchy to the point of being expressed as trees. Because the study of these entities often involves sampling (or discovering) the tree nodes in a specific…

Physics and Society · Physics 2022-04-18 Alexandre Benatti , Luciano da F. Costa

This paper introduces constNJ, the first algorithm for phylogenetic reconstruction of sets of trees with constrained pairwise rooted subtree-prune regraft (rSPR) distance. We are motivated by the problem of constructing sets of trees which…

Populations and Evolution · Quantitative Biology 2009-09-30 Frederick A. Matsen

Phylogenetic trees (i.e. evolutionary trees, additive trees or X-trees) play a key role in the processes of modeling and representing species evolution. Genome evolution of a given group of species is usually modeled by a species…

Populations and Evolution · Quantitative Biology 2023-01-03 Vladimir Makarenkov , Gayane S. Barseghyan , Nadia Tahiri

Joint matching over a collection of objects aims at aggregating information from a large collection of similar instances (e.g. images, graphs, shapes) to improve maps between pairs of them. Given multiple matches computed between a few…

Machine Learning · Computer Science 2015-01-06 Yuxin Chen , Leonidas J. Guibas , Qi-Xing Huang

Contemporary deep clustering approaches often rely on either contrastive or non-contrastive techniques to acquire effective representations for clustering tasks. Contrastive methods leverage negative pairs to achieve homogenous…

Machine Learning · Computer Science 2023-11-03 Abhishek Kumar , Dong-Gyu Lee

Convex clustering is a promising new approach to the classical problem of clustering, combining strong performance in empirical studies with rigorous theoretical foundations. Despite these advantages, convex clustering has not been widely…

Machine Learning · Statistics 2021-11-03 Michael Weylandt , John Nagorski , Genevera I. Allen

Conventional clustering methods based on pairwise affinity usually suffer from the concentration effect while processing huge dimensional features yet low sample sizes data, resulting in inaccuracy to encode the sample proximity and…

Machine Learning · Computer Science 2023-02-06 Hongmin Cai , Fei Qi , Junyu Li , Yu Hu , Yue Zhang , Yiu-ming Cheung , Bin Hu

In the Correlation Clustering problem, we are given a complete weighted graph $G$ with its edges labeled as "similar" and "dissimilar" by a noisy binary classifier. For a clustering $\mathcal{C}$ of graph $G$, a similar edge is in…

Data Structures and Algorithms · Computer Science 2021-08-13 Jafar Jafarov , Sanchit Kalhan , Konstantin Makarychev , Yury Makarychev

Document clustering is an unsupervised approach in which a large collection of documents (corpus) is subdivided into smaller, meaningful, identifiable, and verifiable sub-groups (clusters). Meaningful representation of documents and…

Information Retrieval · Computer Science 2014-12-08 Muhammad Rafi , Farnaz Amin , Mohammad Shahid Shaikh

Spectral clustering views the similarity matrix as a weighted graph, and partitions the data by minimizing a graph-cut loss. Since it minimizes the across-cluster similarity, there is no need to model the distribution within each cluster.…

Methodology · Statistics 2023-04-14 Leo L. Duan , Arkaprava Roy

We herein introduce a new method of interpretable clustering that uses unsupervised binary trees. It is a three-stage procedure, the first stage of which entails a series of recursive binary splits to reduce the heterogeneity of the data…

Methodology · Statistics 2023-12-29 Ricardo Fraiman , Badih Ghattas , Marcela Svarc

Quasi-convex optimization acts a pivotal part in many fields including economics and finance; the subgradient method is an effective iterative algorithm for solving large-scale quasi-convex optimization problems. In this paper, we…

Optimization and Control · Mathematics 2019-10-25 Yaohua Hu , Jiawen Li , Carisa Kwok Wai Yu

Subspace clustering is to find underlying low-dimensional subspaces and cluster the data points correctly. In this paper, we propose a novel multi-view subspace clustering method. Most existing methods suffer from two critical issues.…

Artificial Intelligence · Computer Science 2022-05-24 Mengyuan Zhang , Kai Liu

Traditional nearest points methods use all the samples in an image set to construct a single convex or affine hull model for classification. However, strong artificial features and noisy data may be generated from combinations of training…

Computer Vision and Pattern Recognition · Computer Science 2014-08-27 Shaokang Chen , Arnold Wiliem , Conrad Sanderson , Brian C. Lovell

We devise a generalization of tree approximation that generates conforming meshes, i.e., meshes with a particular structure like edge-to-edge triangulations. A key feature of this generalization is that the choices of the cells to be…

Numerical Analysis · Mathematics 2023-01-26 Peter Binev , Francesca Fierro , Andreas Veeser

This paper presents a novel geometrical approach to investigate the convexity of a density-based cluster. Our approach is grid-based and we are about to calibrate the value space of the cluster. However, the cluster objects are coming from…

Computational Geometry · Computer Science 2020-09-25 Sayyed-Ahmad Naghavi-Nozad

The problem of hierarchical clustering items from pairwise similarities is found across various scientific disciplines, from biology to networking. Often, applications of clustering techniques are limited by the cost of obtaining…

Machine Learning · Statistics 2012-07-20 Brian Eriksson

Clustering approaches that utilize convex loss functions have recently attracted growing interest in the formation of compact data clusters. Although classical methods like k-means and its wide family of variants are still widely used, all…

There is a growing interest in characterizing circular data found in biological systems. Such data are wide ranging and varied, from signal phase in neural recordings to nucleotide sequences in round genomes. Traditional clustering…

Machine Learning · Computer Science 2023-09-19 Xiaoxiao Sun , Paul Sajda