Related papers: Two Deletion Correcting Codes from Indicator Vecto…
Motivated by applications in in-vivo DNA storage, we study codes for correcting duplications. A reverse-complement duplication of length $k$ is the insertion of the reversed and complemented copy of a substring of length $k$ adjacent to its…
The noise model of deletions poses significant challenges in coding theory, with basic questions like the capacity of the binary deletion channel still being open. In this paper, we study the harder model of worst-case deletions, with a…
Batch codes are a useful notion of locality for error correcting codes, originally introduced in the context of distributed storage and cryptography. Many constructions of batch codes have been given, but few lower bound (limitation)…
In this paper, we present an explicit construction of list-decodable codes for single-deletion and single-substitution with list size two and redundancy 3log n+4, where n is the block length of the code. Our construction has lower…
Varshamov-Tenengolts (VT) codes are a class of codes which can correct a single deletion or insertion with a linear-time decoder. This paper addresses the problem of efficient encoding of non-binary VT codes, defined over an alphabet of…
In this paper, for any fixed positive integers $t$ and $q>2$, we construct $q$-ary codes correcting a burst of at most $t$ deletions with redundancy $\log n+8\log\log n+o(\log\log n)+\gamma_{q,t}$ bits and near-linear encoding/decoding…
We compare the performance of short-length linear binary codes on the binary erasure channel and the binary-input Gaussian channel. We use a universal decoder that can decode any linear binary block code: Gaussian-elimination based…
We consider codes over fixed alphabets against worst-case symbol deletions. For any fixed $k \ge 2$, we construct a family of codes over alphabet of size $k$ with positive rate, which allow efficient recovery from a worst-case deletion…
Motivated by DNA-based storage applications, we study the problem of reconstructing a coded sequence from multiple traces. We consider the model where the traces are outputs of independent deletion channels, where each channel deletes each…
In this work, we derive upper bounds on the cardinality of tandem duplication and palindromic deletion correcting codes by deriving the generalized sphere packing bound for these error types. We first prove that an upper bound for tandem…
In this work, we consider the problem of efficient decoding of codes from insertions and deletions. Most of the known efficient codes are codes with synchronization strings which allow one to reduce the problem of decoding insertions and…
Motivated by applications to distributed storage, Gopalan \textit{et al} recently introduced the interesting notion of information-symbol locality in a linear code. By this it is meant that each message symbol appears in a parity-check…
This paper gives some theory and efficient design of binary block systematic codes capable of controlling the deletions of the symbol ``$0$'' (referred to as $0$-deletions) and/or the insertions of the symbol ``$0$'' (referred to as…
An insdel refers to a deletion or an insertion, and an edit refers to an insdel or a substitution. In this paper, we consider the segmented single-insdel (resp. single-edit) channel, where the channel's input bit stream is partitioned into…
In this paper, we consider quantized decoding of LDPC codes on the binary symmetric channel. The binary message passing algorithms, while allowing extremely fast hardware implementation, are not very attractive from the perspective of…
Finding deletion-correcting codes of maximum size has been an open problem for over 70 years, even for a single deletion. In this paper, we propose a novel approach for constructing deletion-correcting codes. A code is a set of sequences…
Motivated by the sequence reconstruction problem initiated by Levenshtein, reconstruction codes were introduced by Cai \emph{et al}. to combat errors when a fixed number of noisy channels are available. The central problem on this topic is…
The bit-error threshold of the standard ensemble of Low Density Parity Check (LDPC) codes is known to be close to capacity, if there is a non-zero fraction of degree-two bit nodes. However, the degree-two bit nodes preclude the possibility…
We study deletion-correcting codes for an adversarial nanopore channel in which at most $t$ deletions may occur. We propose an explicit construction of $q$-ary codes of length $n$ for this channel with $2t\log_q n+\Theta(\log\log n)$…
We present simple constructions of optimal erasure-correcting LRC codes by exhibiting their parity-check matrices. When the number of local parities in a parity group plus the number of global parities is smaller than the size of the parity…