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Topic modelling is a text mining technique for identifying salient themes from a number of documents. The output is commonly a set of topics consisting of isolated tokens that often co-occur in such documents. Manual effort is often…

Computation and Language · Computer Science 2024-04-26 Lowri Williams , Eirini Anthi , Laura Arman , Pete Burnap

As the size of images and data products derived from astronomical data continues to increase, new tools are needed to visualize and interact with that data in a meaningful way. Motivated by our own astronomical images taken with the Dark…

Instrumentation and Methods for Astrophysics · Physics 2015-11-19 Fred Moolekamp , Eric Mamajek

Topological Data Analysis (TDA) gives practioners the ability to analyse the global structure of cybersecurity data. We use TDA for anomaly detection in host-based logs collected with the open-source Logging Made Easy (LME) project. We…

Machine Learning · Computer Science 2022-04-28 Thomas Davies

Reasoning over Temporal Knowledge Graphs (TKGs) aims to predict future facts based on given history. One of the key challenges for prediction is to learn the evolution of facts. Most existing works focus on exploring evolutionary…

Artificial Intelligence · Computer Science 2023-02-03 Yuwei Xia , Mengqi Zhang , Qiang Liu , Shu Wu , Xiao-Yu Zhang

We present the Feature Tracking Kit (FTK), a framework that simplifies, scales, and delivers various feature-tracking algorithms for scientific data. The key of FTK is our high-dimensional simplicial meshing scheme that generalizes both…

Periodic and semi periodic patterns are very common in nature. In this paper we introduce a topological toolbox aiming in detecting and quantifying periodicity. The presented technique is of a general nature and may be employed wherever…

Algebraic Topology · Mathematics 2019-05-30 Paweł Dłotko , Wanling Qiu , Simon Rudkin

Data intensive research requires the support of appropriate datasets. However, it is often time-consuming to discover usable datasets matching a specific research topic. We formulate the dataset discovery problem on an attributed…

Information Retrieval · Computer Science 2021-06-08 Basmah Altaf , Shichao Pei , Xiangliang Zhang

We apply topological data analysis to the behavior of C. elegans, a widely-studied model organism in biology. In particular, we use topology to produce a quantitative summary of complex behavior which may be applied to high-throughput data.…

Algebraic Topology · Mathematics 2021-07-23 Ashleigh Thomas , Kathleen Bates , Alex Elchesen , Iryna Hartsock , Hang Lu , Peter Bubenik

Topological data analysis (TDA) is a branch of computational mathematics, bridging algebraic topology and data science, that provides compact, noise-robust representations of complex structures. Deep neural networks (DNNs) learn millions of…

This paper presents a new algorithm for the lossy compression of scalar data defined on 2D or 3D regular grids, with topological control. Certain techniques allow users to control the pointwise error induced by the compression. However, in…

Image and Video Processing · Electrical Eng. & Systems 2018-02-09 Maxime Soler , Melanie Plainchault , Bruno Conche , Julien Tierny

NLTK, the Natural Language Toolkit, is a suite of open source program modules, tutorials and problem sets, providing ready-to-use computational linguistics courseware. NLTK covers symbolic and statistical natural language processing, and is…

Computation and Language · Computer Science 2007-05-23 Edward Loper , Steven Bird

We perform topological data analysis on the internal states of convolutional deep neural networks to develop an understanding of the computations that they perform. We apply this understanding to modify the computations so as to (a) speed…

Machine Learning · Computer Science 2018-11-06 Gunnar Carlsson , Rickard Brüel Gabrielsson

We present the first release of TAPPS (Technical Analysis and Applied Statistics System); a Python implementation of a thin software platform aimed towards technical analyses and applied statistics. The core of TAPPS is a container for…

Mathematical Software · Computer Science 2023-02-24 Justin Sam Chew , Maurice HT Ling

Recent advances in knowledge distillation (KD) predominantly emphasize feature-level knowledge transfer, frequently overlooking critical information embedded within the teacher's logit distributions. In this paper, we revisit logit-based…

Computer Vision and Pattern Recognition · Computer Science 2025-08-07 Qi Wang , Jinjia Zhou

In the field of machine learning, data understanding is the practice of getting initial insights in unknown datasets. Such knowledge-intensive tasks require a lot of documentation, which is necessary for data scientists to grasp the meaning…

Databases · Computer Science 2018-06-14 Markus Schröder , Christian Jilek , Jörn Hees , Andreas Dengel

Topological data analysis is an emerging area in exploratory data analysis and data mining. Its main tool, persistent homology, has become a popular technique to study the structure of complex, high-dimensional data. In this paper, we…

Graphics · Computer Science 2017-10-04 Mustafa Hajij , Bei Wang , Carlos Scheidegger , Paul Rosen

Table-based question answering (TableQA) is an important task in natural language processing, which requires comprehending tables and employing various reasoning ways to answer the questions. This paper introduces TableQAKit, the first…

Computation and Language · Computer Science 2023-10-24 Fangyu Lei , Tongxu Luo , Pengqi Yang , Weihao Liu , Hanwen Liu , Jiahe Lei , Yiming Huang , Yifan Wei , Shizhu He , Jun Zhao , Kang Liu

TOPCAT is a desktop GUI tool for working with tabular data such as source catalogues. Among other capabilities it provides a rich set of visualisation options suitable for interactive exploration of large datasets. The latest release…

Instrumentation and Methods for Astrophysics · Physics 2024-01-03 Mark Taylor

In this work, we present a computational framework for exploring and analyzing the macroscopic dynamics of complex agent-based network models by integrating Topological Data Analysis with the Equation-Free Method. To demonstrate the…

Dynamical Systems · Mathematics 2026-02-17 Konstantinos Spiliotis , Ole Sönnerborn , Haralampos Hatzikirou , Nikos I. Kavallaris

Accurate bone strength prediction is essential for assessing fracture risk, particularly in aging populations and individuals with osteoporosis. Bone imaging has evolved from X-rays and DXA to clinical computed tomography (CT), and now to…

Quantitative Methods · Quantitative Biology 2025-12-04 John Rick Manzanares , Richard Leslie Abel , Paweł Dłotko