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In this article, we review the different models and methods to understand and estimate correlated evolution within the same genome, individual or species. We describe correlated evolution among traits, among genetic components and finally…

Populations and Evolution · Quantitative Biology 2021-03-23 Guillaume Achaz , Julien Dutheil

In theoretical ecology, models describing the spatial dispersal and the temporal evolution of species having non-overlapping generations are often based on integrodifference equations. For various such applications the environment has an…

Dynamical Systems · Mathematics 2022-05-12 Huy Huy , Peter E. Kloeden , Christian Pötzsche

Geographic ranges of communities of species evolve in response to environmental, ecological, and evolutionary forces. Understanding the effects of these forces on species' range dynamics is a major goal of spatial ecology. Previous…

Populations and Evolution · Quantitative Biology 2022-02-02 Farshad Shirani , Judith R. Miller

The modeling of complex systems such as ecological or socio-economic systems can be very challenging. Although various modeling approaches exist, they are generally not compatible and mutually consistent, and empirical data often do not…

Physics and Society · Physics 2010-07-19 Dirk Helbing

Ecosystem models are often used to predict the consequences of management decisions in applied ecology, including fisheries management and threatened species conservation. These models are high-dimensional, parameter-rich, and nonlinear,…

Populations and Evolution · Quantitative Biology 2024-01-22 Larissa Lubiana Botelho , Cailan Jeynes-Smith , Sarah Vollert , Michael Bode

Interactions between transportation networks and territories are the subject of open scientific debates, in particular regarding the possible existence of structuring effects of networks, and linked to crucial practical issues of…

Physics and Society · Physics 2019-02-14 J. Raimbault

This paper presents a high-level conceptual framework to help orient the discussion and implementation of open-endedness in evolutionary systems. Drawing upon earlier work by Banzhaf et al., three different kinds of open-endedness are…

Neural and Evolutionary Computing · Computer Science 2019-02-22 Tim Taylor

Exploiting others is beneficial individually but it could also be detrimental globally. The reverse is also true: a higher cooperation level may change the environment in a way that is beneficial for all competitors. To explore the possible…

Physics and Society · Physics 2018-02-23 Attila Szolnoki , Xiaojie Chen

The changes on abiotic features of ecosystems have rarely been taken into account by population dynamics models, which typically focus on trophic and competitive interactions between species. However, understanding the population dynamics…

Populations and Evolution · Quantitative Biology 2017-08-14 Caroline Franco , José F. Fontanari

Control theory arose from a need to control synthetic systems. From regulating steam engines to tuning radios to devices capable of autonomous movement, it provided a formal mathematical basis for understanding the role of feedback in the…

While the excitement around the capabilities of technological advancements is giving rise to new AI-based writing assistants, the overarching ecosystem plays a crucial role in how they are adopted in educational practice. In this paper, we…

Human-Computer Interaction · Computer Science 2024-05-15 Antonette Shibani , Simon Buckingham Shum

Accurate biodiversity monitoring is essential for effective environmental policy, yet current practices often rely on arbitrarily defined ecosystems, communities, and ad-hoc indicator species, limiting cost-efficiency and reproducibility.…

Applications · Statistics 2025-12-02 Braden Scherting , Otso Ovaskainen , Tomas Roslin , David B. Dunson

Mathematical models are increasingly a part of microbiological research. Here, we share our perspective on how modeling advances the discipline by: (i) enforcing logical consistency, (ii) enabling quantitative prediction, (iii) extracting…

Other Quantitative Biology · Quantitative Biology 2026-04-22 Jamie A. Lopez , Amir Erez

Recently, the eco-evolutionary game theory which describes the coupled dynamics of strategies and environment have attracted great attention. At the same time, most of the current work is focused on the classic two-player two-strategy game.…

Physics and Society · Physics 2021-11-22 Bin-Quan Li , Cong Liu , Zhi-Xi Wu , Jian-Yue Guan

We introduce the Webworld model, which links together the ecological modelling of food web structure with the evolutionary modelling of speciation and extinction events. The model describes dynamics of ecological communities on an…

adap-org · Physics 2007-05-23 Guido Caldarelli , Paul G. Higgs , Alan J. McKane

The networks of predator-prey interactions in ecological systems are remarkably complex, but nevertheless surprisingly stable in terms of long term persistence of the system as a whole. In order to understand the mechanism driving the…

Populations and Evolution · Quantitative Biology 2015-06-05 Korinna T. Allhoff , Daniel Ritterskamp , Björn C. Rall , Barbara Drossel , Christian Guill

System dynamics is a methodology that is widely used in many academic fields. It explains the behavior of social and economic systems with models that capture complex causality and feedback effects. This 'practice paper' discusses the…

How do social-ecological systems change over time? In 2002 Holling and colleagues proposed the concept of Panarchy, which presented social-ecological systems as an interacting set of adaptive cycles, each of which is produced by the dynamic…

Computation and Language · Computer Science 2020-12-29 Juan Rocha , Linda Luvuno , Jesse Rieb , Erin Crockett , Katja Malmborg , Michael Schoon , Garry Peterson

Models of coupled human-environment systems often face a tradeoff between realism and tractability. Spectrum opinion models, where social preferences vary continuously, offer descriptive richness but are computationally demanding and…

Physics and Society · Physics 2025-09-30 Yazdan Babazadeh Maghsoodlo , Madhur Anand , Chris T. Bauch

Comparative and evolutive ecologists are interested in the distribution of quantitative traits among related species. The classical framework for these distributions consists of a random process running along the branches of a phylogenetic…

Applications · Statistics 2017-08-24 Paul Bastide , Mahendra Mariadassou , Stéphane Robin