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One of the most fundamental method for comparing two given strings $A$ and $B$ is the longest common subsequence (LCS), where the task is to find (the length) of an LCS of $A$ and $B$. In this paper, we deal with the STR-IC-LCS problem…

Data Structures and Algorithms · Computer Science 2024-05-21 Yuki Yonemoto , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai

The rise of repetitive datasets has lately generated a lot of interest in compressed self-indexes based on dictionary compression, a rich and heterogeneous family that exploits text repetitions in different ways. For each such compression…

Data Structures and Algorithms · Computer Science 2020-12-17 Gonzalo Navarro , Nicola Prezza

We present a compressed representation of tries based on top tree compression [ICALP 2013] that works on a standard, comparison-based, pointer machine model of computation and supports efficient prefix search queries. Namely, we show how to…

Data Structures and Algorithms · Computer Science 2019-09-23 Philip Bille , Inge Li Gørtz , Paweł Gawrychowski , Gad M. Landau , Oren Weimann

Large Language Models (LLMs) face significant computational challenges when processing long contexts due to the quadratic complexity of self-attention. While soft context compression methods, which map input text to smaller latent…

Computation and Language · Computer Science 2025-09-24 Gabriele Berton , Jayakrishnan Unnikrishnan , Son Tran , Mubarak Shah

The paper proposes an improved error-resilient Lempel-Ziv'77 (LZ'77) algorithm employing an adaptive amount of parity bits for error protection. It is a modified version of error resilient algorithm LZRS'77, proposed recently, which uses a…

Information Theory · Computer Science 2008-04-21 Tomaz Korosec , Saso Tomazic

In this paper we study the adaptive prefix coding problem in cases where the size of the input alphabet is large. We present an online prefix coding algorithm that uses $O(\sigma^{1 / \lambda + \epsilon}) $ bits of space for any constants…

Data Structures and Algorithms · Computer Science 2008-11-24 Travis Gagie , Marek Karpinski , Yakov Nekrich

Large Language Models (LLMs) have changed the way natural language processing works, but it is still hard to store and manage prompts efficiently in production environments. This paper presents LoPace (Lossless Optimized Prompt Accurate…

Databases · Computer Science 2026-02-17 Aman Ulla

We introduce a compressed suffix array representation that, on a text $T$ of length $n$ over an alphabet of size $\sigma$, can be built in $O(n)$ deterministic time, within $O(n\log\sigma)$ bits of working space, and counts the number of…

Data Structures and Algorithms · Computer Science 2017-09-05 J. Ian Munro , Gonzalo Navarro , Yakov Nekrich

Large Language Models (LLMs) have recently achieved remarkable progress by leveraging Reinforcement Learning and extended Chain-of-Thought (CoT) techniques. However, the challenge of performing efficient language reasoning--especially…

Computation and Language · Computer Science 2025-06-17 Zhong-Zhi Li , Xiao Liang , Zihao Tang , Lei Ji , Peijie Wang , Haotian Xu , Xing W , Haizhen Huang , Weiwei Deng , Yeyun Gong , Zhijiang Guo , Xiao Liu , Fei Yin , Cheng-Lin Liu

Explicit chain-of-thought (CoT) reasoning substantially improves the reasoning ability of large language models (LLMs), but incurs high inference cost due to lengthy autoregressive traces. Existing latent reasoning methods offer a promising…

Computation and Language · Computer Science 2026-05-26 Hui Xie , Jie Liu , Ziyue Qiao , Joaquin Vanschore

Given $m$ documents of total length $n$, we consider the problem of finding a longest string common to at least $d \geq 2$ of the documents. This problem is known as the \emph{longest common substring (LCS) problem} and has a classic $O(n)$…

Data Structures and Algorithms · Computer Science 2014-07-03 Tomasz Kociumaka , Tatiana Starikovskaya , Hjalte Wedel Vildhøj

The advent of massive datasets (and the consequent design of high-performing distributed storage systems) have reignited the interest of the scientific and engineering community towards the design of lossless data compressors which achieve…

Information Theory · Computer Science 2013-07-16 Andrea Farruggia , Paolo Ferragina , Antonio Frangioni , Rossano Venturini

A Straight-Line Program (SLP) $G$ for a string $T$ is a context-free grammar (CFG) that derives $T$ only, which can be considered as a compressed representation of $T$. In this paper, we show how to encode $G$ in $n \lceil \lg N \rceil + (n…

Data Structures and Algorithms · Computer Science 2026-01-09 Akito Takasaka , Tomohiro I

In pattern matching on strings, a locate query asks for an enumeration of all the occurrences of a given pattern in a given text. The r-index [Gagie et al., 2018] is a recently presented compressed self index that stores the text and…

Data Structures and Algorithms · Computer Science 2025-07-29 Patrick Dinklage , Johannes Fischer , Lukas Nalbach , Jan Zumbrink

Consider a text $T [1..n]$ prefixed by a reference sequence $R = T [1..\ell]$. We show how, given $R$ and the $z'$-phrase relative Lempel-Ziv parse of $T [\ell + 1..n]$ with respect to $R$, we can build the LZ77 parse of $T$ in…

Data Structures and Algorithms · Computer Science 2022-12-06 Travis Gagie

The Longest Common Subsequence (LCS) of two strings is a fundamental string similarity measure with a classical dynamic programming solution taking quadratic time. Despite significant efforts, little progress was made in improving the…

Data Structures and Algorithms · Computer Science 2021-12-17 Negev Shekel Nosatzki

A well-known fact in the field of lossless text compression is that high-order entropy is a weak model when the input contains long repetitions. Motivated by this, decades of research have generated myriads of so-called dictionary…

Data Structures and Algorithms · Computer Science 2020-12-17 Dominik Kempa , Nicola Prezza

The longest common subsequence (LCS) problem is a central problem in stringology that finds the longest common subsequence of given two strings $A$ and $B$. More recently, a set of four constrained LCS problems (called generalized…

Data Structures and Algorithms · Computer Science 2020-01-17 Kohei Yamada , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

Key-Value cache (\texttt{KV} \texttt{cache}) compression has emerged as a promising technique to optimize Large Language Model (LLM) serving. It primarily decreases the memory consumption of \texttt{KV} \texttt{cache} to reduce the…

Machine Learning · Computer Science 2025-04-01 Wei Gao , Xinyu Zhou , Peng Sun , Tianwei Zhang , Yonggang Wen

Run-length encoding Burrows-Wheeler Transformed strings, resulting in Run-Length BWT (RLBWT), is a powerful tool for processing highly repetitive strings. We propose a new algorithm for online RLBWT working in run-compressed space, which…

Data Structures and Algorithms · Computer Science 2017-10-17 Tatsuya Ohno , Yoshimasa Takabatake , Tomohiro I , Hiroshi Sakamoto