Related papers: Reversible Codes and Its Application to Reversible…
In this paper, we study the problem of sorting unichromosomal linear genomes by prefix double-cut-and-joins (or DCJs) in both the signed and the unsigned settings. Prefix DCJs cut the leftmost segment of a genome and any other segment, and…
In a recent paper, Kim and Kopparty (Theory of Computing, 2017) gave a deterministic algorithm for the unique decoding problem for polynomials of bounded total degree over a general grid. We show that their algorithm can be adapted to solve…
In this work, we investigate a challenging problem, which has been considered to be an important criterion in designing codewords for DNA computing purposes, namely secondary structure avoidance in single-stranded DNA molecules. In short,…
Locally recoverable codes were introduced by Gopalan et al. in 2012, and in the same year Prakash et al. introduced the concept of codes with locality, which are a type of locally recoverable codes. In this work we introduce a new family of…
We discuss the problem of classifying Dembowski-Ostrom polynomials from the composition of reversed Dickson polynomials of arbitrary kind and monomials over finite fields of odd characteristic. Moreover, by using a variant of the Weil bound…
A classic result of Ritt describes polynomials invertible in radicals: they are compositions of power polynomials, Chebyshev polynomials and polynomials of degree at most 4. In this paper we prove that a polynomial invertible in radicals…
We construct a family of (n,k) convolutional codes with degree \delta in {k,n-k} that have a maximum distance profile. The field size required for our construction is of the order n^{2\delta}, which improves upon the known constructions of…
Convolutional codes are error-correcting linear codes that utilize shift registers to encode. These codes have an arbitrary block size and they can incorporate both past and current information bits. DNA codes represent DNA sequences and…
We achieve new results on skew polynomial rings and their quotients, including the first explicit example of a skew polynomial ring where the ratio of the degree of a skew polynomial to the degree of its bound is not extremal. These methods…
Huffman coding finds an optimal prefix code for a given probability mass function. Consider situations in which one wishes to find an optimal code with the restriction that all codewords have lengths that lie in a user-specified set of…
To increase the information capacity of DNA storage, composite DNA letters were introduced. We propose a novel channel model for composite DNA in which composite sequences are decomposed into ordered standard non-composite sequences. The…
Based on unique decoding of the polynomial residue code with non-pairwise coprime moduli, a polynomial with degree less than that of the least common multiple (lcm) of all the moduli can be accurately reconstructed when the number of…
Diaconis and Griffiths (2014) study the multivariate Krawtchouk polynomials orthogonal on the multinomial distribution. In this paper we derive the reproducing kernel orthogonal polynomials Q_n(x,y};N,p) on the multinomial distribution…
The inverse of a large matrix can often be accurately approximated by a polynomial of degree significantly lower than the order of the matrix. The iteration polynomial generated by a run of the GMRES algorithm is a good candidate, and its…
Subspace codes have received an increasing interest recently due to their application in error-correction for random network coding. In particular, cyclic subspace codes are possible candidates for large codes with efficient encoding and…
We propose new repair schemes for Reed-Solomon codes that use subspace polynomials and hence generalize previous works in the literature that employ trace polynomials. The Reed-Solomon codes are over $\mathbb{F}_{q^\ell}$ and have…
We generalize the notion of cyclic codes by using generator polynomials in (non commutative) skew polynomial rings. Since skew polynomial rings are left and right euclidean, the obtained codes share most properties of cyclic codes. Since…
Regenerating codes allow distributed storage systems to recover from the loss of a storage node while transmitting the minimum possible amount of data across the network. We present a systematic computer search for optimal systematic…
DNA as a data storage medium has several advantages, including far greater data density compared to electronic media. We propose that schemes for data storage in the DNA of living organisms may benefit from studying the reconstruction…
We consider the question of certifying that a polynomial in ${\mathbb Z}[x]$ or ${\mathbb Q}[x]$ is irreducible. Knowing that a polynomial is irreducible lets us recognise that a quotient ring is actually a field extension (equiv.~that a…