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With small-scale quantum processors transitioning from experimental physics labs to industrial products, these processors allow us to efficiently compute important algorithms in various fields. In this paper, we propose a quantum algorithm…
Designing short DNA words is a problem of constructing a set (i.e., code) of n DNA strings (i.e., words) with the minimum length such that the Hamming distance between each pair of words is at least k and the n words satisfy a set of…
The classical family of $[n,k]_q$ Reed-Solomon codes over a field $\F_q$ consist of the evaluations of polynomials $f \in \F_q[X]$ of degree $< k$ at $n$ distinct field elements. In this work, we consider a closely related family of codes,…
Quadratic residue codes have been one of the most important classes of algebraic codes. They have been generalized into duadic codes and quadratic double circulant codes. In this paper we introduce a new subclass of double circulant codes,…
We provide an irreducibility test in the ring K[[x]][y] whose complexity is quasi-linear with respect to the valuation of the discriminant, assuming the input polynomial F square-free and K a perfect field of characteristic zero or greater…
Let $A=\frac{\mathbb{F}[x]}{\langle f(x)\rangle }$, where $f(x)$ is a monic polynomial over a finite field $\mathbb{F}$. In this paper, we study the relation between $A$-codes and their duals. In particular, we state a counterexample and a…
A linear code with parameters of the form $[n, k, n-k+1]$ is referred to as an MDS (maximum distance separable) code. A linear code with parameters of the form $[n, k, n-k]$ is said to be almost MDS (i.e., almost maximum distance separable)…
DNA sequences are prone to creating secondary structures by folding back on themselves by non-specific hybridization among its nucleotides. The formation of secondary structures makes the sequences chemically inactive towards synthesis and…
In this paper we consider in detail the composition of an irreducible polynomial with X^2 and suggest a recurrent construction of irreducible polynomials of fixed degree over finite fields of odd characteristics. More precisely, given an…
DNA synthesis is considered as one of the most expensive components in current DNA storage systems. In this paper, focusing on a common synthesis machine, which generates multiple DNA strands in parallel following a fixed supersequence,we…
Locally recoverable codes (LRCs) with locality parameter $r$ can recover any erased code symbol by accessing $r$ other code symbols. This local recovery property is of great interest in large-scale distributed classical data storage systems…
The structures of cyclic DNA codes of odd length over the finite rings R=Z_{4}+wZ_{4}, w^{2}=2 and S=Z_{4}+wZ_{4}+vZ_{4}+wvZ_{4},w^{2}=2,v^{2}=v,wv=vw are studied. The links between the elements of the rings R, S and 16 and 256 codons are…
A new construction is proposed for low density parity check (LDPC) codes using quadratic permutation polynomials over finite integer rings. The associated graphs for the new codes have both algebraic and pseudo-random nature, and the new…
A method for generating irreducible polynomials of degree n over the finite field GF(2) is proposed. The irreducible polynomials are found by solving a system of equations that brings the information on the internal properties of the…
DNA, with remarkable properties of high density, durability, and replicability, is one of the most appealing storage media. Emerging DNA storage technologies use composite DNA letters, where information is represented by probability…
We answer a question of Samir Siksek, asked at the open problems session of the conference ``Rational Points 2022'', which, in a broader sense, can be viewed as a reverse engineering of Diophantine equations. For any finite set $S$ of…
The way to infer well-supported phylogenetic trees that precisely reflect the evolutionary process is a challenging task that completely depends on the way the related core genes have been found. In previous computational biology studies,…
Let $g(X)$ be a polynomial over a finite field ${\mathbb F}_q$ with degree $o(q^{1/2})$, and let $\chi$ be the quadratic residue character. We give a polynomial time algorithm to recover $g(X)$ (up to perfect square factors) given the…
A simple construction of quaternary hermitian self-orthogonal codes with parameters $[2n+1,k+1]$ and $[2n+2,k+2]$ from a given pair of self-orthogonal $[n,k]$ codes, and its link to quantum codes is considered. As an application, an optimal…
Locally repairable codes (LRCs) are a class of erasure codes that are widely used in distributed storage systems, which allow for efficient recovery of data in the case of node failures or data loss. In 2014, Tamo and Barg introduced…