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Grammatical Evolution (GE) is one of the most popular Genetic Programming (GP) variants, and it has been used with success in several problem domains. Since the original proposal, many enhancements have been proposed to GE in order to…

Neural and Evolutionary Computing · Computer Science 2021-03-16 Jessica Mégane , Nuno Lourenço , Penousal Machado

Learning ensembles by bagging can substantially improve the generalization performance of low-bias, high-variance estimators, including those evolved by Genetic Programming (GP). To be efficient, modern GP algorithms for evolving (bagging)…

Neural and Evolutionary Computing · Computer Science 2021-02-08 Marco Virgolin

Deploying machine learning models into sensitive domains in our society requires these models to be explainable. Genetic Programming (GP) can offer a way to evolve inherently interpretable expressions. GP-GOMEA is a form of GP that has been…

Neural and Evolutionary Computing · Computer Science 2024-02-16 Thalea Schlender , Mafalda Malafaia , Tanja Alderliesten , Peter A. N. Bosman

Existing genetic programming (GP) methods are typically designed based on a certain representation, such as tree-based or linear representations. These representations show various pros and cons in different domains. However, due to the…

Neural and Evolutionary Computing · Computer Science 2025-05-30 Zhixing Huang , Yi Mei , Fangfang Zhang , Mengjie Zhang , Wolfgang Banzhaf

This work proposes Adaptive Facilitated Mutation, a self-adaptive mutation method for Structured Grammatical Evolution (SGE), biologically inspired by the theory of facilitated variation. In SGE, the genotype of individuals contains a list…

Neural and Evolutionary Computing · Computer Science 2023-03-31 Pedro Carvalho , Jessica Mégane , Nuno Lourenço , Penousal Machado

Grammars provide a convenient and powerful mechanism to define the space of possible solutions for a range of problems. However, when used in grammatical evolution (GE), great care must be taken in the design of a grammar to ensure that the…

Neural and Evolutionary Computing · Computer Science 2022-04-18 Grant Dick , Peter A. Whigham

This work discusses single-objective constrained genetic algorithm with floating-point, integer, binary and permutation representation. Floating-point genetic algorithm tuning with use of test functions is done and leads to a…

Neural and Evolutionary Computing · Computer Science 2022-10-10 Tomasz Tarkowski

This paper introduces Multi-population Ensemble Genetic Programming (MEGP), a computational intelligence framework that integrates cooperative coevolution and the multiview learning paradigm to address classification challenges in…

Neural and Evolutionary Computing · Computer Science 2025-09-25 Mohammad Sadegh Khorshidi , Navid Yazdanjue , Hassan Gharoun , Mohammad Reza Nikoo , Fang Chen , Amir H. Gandomi

We propose a genetic algorithm (GA) based method for modifying n-best lists produced by a machine translation (MT) system. Our method offers an innovative approach to improving MT quality and identifying weaknesses in evaluation metrics.…

Computation and Language · Computer Science 2023-06-01 Josef Jon , Ondřej Bojar

Feature construction can substantially improve the accuracy of Machine Learning (ML) algorithms. Genetic Programming (GP) has been proven to be effective at this task by evolving non-linear combinations of input features. GP additionally…

Neural and Evolutionary Computing · Computer Science 2020-01-13 Marco Virgolin , Tanja Alderliesten , Peter A. N. Bosman

Grammatical Evolution (GE) is a population-based evolutionary algorithm, where a formal grammar is used in the genotype to phenotype mapping process. PonyGE2 is an open source implementation of GE in Python, developed at UCD's Natural…

Neural and Evolutionary Computing · Computer Science 2017-04-27 Michael Fenton , James McDermott , David Fagan , Stefan Forstenlechner , Michael O'Neill , Erik Hemberg

This paper presents a novel method, called Modular Grammatical Evolution (MGE), towards validating the hypothesis that restricting the solution space of NeuroEvolution to modular and simple neural networks enables the efficient generation…

Neural and Evolutionary Computing · Computer Science 2022-08-05 Khabat Soltanian , Ali Ebnenasir , Mohsen Afsharchi

Genomic language models (gLMs) have shown mostly modest success in identifying evolutionarily constrained elements in mammalian genomes. To address this issue, we introduce a novel framework for training gLMs that explicitly models…

Genomics · Quantitative Biology 2026-03-23 Carlos Albors , Jianan Canal Li , Gonzalo Benegas , Chengzhong Ye , Yun S. Song

Grammar-Guided Genetic Programming (GGGP) employs a variety of insights from evolutionary theory to autonomously design solutions for a given task. Recent insights from evolutionary biology can lead to further improvements in GGGP…

Neural and Evolutionary Computing · Computer Science 2023-07-13 Stefano Tiso , Pedro Carvalho , Nuno Lourenço , Penousal Machado

Cartesian Genetic Programming (CGP) has many modifications across a variety of implementations, such as recursive connections and node weights. Alternative genetic operators have also been proposed for CGP, but have not been fully studied.…

Neural and Evolutionary Computing · Computer Science 2018-10-10 DG Wilson , Julian F. Miller , Sylvain Cussat-Blanc , Hervé Luga

Genotype-to-phenotype mappings translate genotypic variations such as mutations into phenotypic changes. Neutrality is the observation that some mutations do not lead to phenotypic changes. Studying the search trajectories in genotypic and…

Populations and Evolution · Quantitative Biology 2023-06-26 Ting Hu , Gabriela Ochoa , Wolfgang Banzhaf

In evolutionary policy search, neural networks are usually represented using a direct mapping: each gene encodes one network weight. Indirect encoding methods, where each gene can encode for multiple weights, shorten the genome to reduce…

Neural and Evolutionary Computing · Computer Science 2024-12-13 Tarek Kunze , Paul Templier , Dennis G Wilson

Semantic GP is a promising approach that introduces semantic awareness during genetic evolution. This paper presents a new Semantic GP approach based on Dynamic Target (SGP-DT) that divides the search problem into multiple GP runs. The…

Neural and Evolutionary Computing · Computer Science 2020-02-03 Stefano Ruberto , Valerio Terragni , Jason H. Moore

The rapid development of generative models for single-cell gene expression data has created an urgent need for standardised evaluation frameworks. Current evaluation practices suffer from inconsistent metric implementations, incomparable…

Genomics · Quantitative Biology 2026-03-13 Andrea Rubbi , Andrea Giuseppe Di Francesco , Mohammad Lotfollahi , Pietro Liò

Mathematical reasoning remains an ongoing challenge for AI models, especially for geometry problems that require both linguistic and visual signals. As the vision encoders of most MLLMs are trained on natural scenes, they often struggle to…

Computer Vision and Pattern Recognition · Computer Science 2024-09-10 Zeren Zhang , Jo-Ku Cheng , Jingyang Deng , Lu Tian , Jinwen Ma , Ziran Qin , Xiaokai Zhang , Na Zhu , Tuo Leng
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