Related papers: From unicellular fatgraphs to trees
A unicellular map is the embedding of a connected graph in a surface in such a way that the complement of the graph is a topological disk. In this paper we present a bijective link between unicellular maps on a non-orientable surface and…
A caterpillar tree is a connected, acyclic, graph in which all vertices are either a member of a central path, or joined to that central path by a single edge. In other words, caterpillar trees are the class of trees which become path…
We investigate the tree gonality of a genus-$g$ metric graph, defined as the minimum degree of a tropical morphism from any tropical modification of the metric graph to a metric tree. We give a combinatorial constructive proof that this…
This paper begins the study of reconfiguration of zero forcing sets, and more specifically, the zero forcing graph. Given a base graph $G$, its zero forcing graph, $\mathscr{Z}(G)$, is the graph whose vertices are the minimum zero forcing…
To untangle a geometric graph means to move some of the vertices so that the resulting geometric graph has no crossings. Pach and Tardos [Discrete Comput. Geom., 2002] asked if every n-vertex geometric planar graph can be untangled while…
The decomposition of a density function on a domain into a minimal sum of unimodal components is a fundamental problem in statistics, leading to the topological invariant of unimodal category of a density. This paper gives an efficient…
Phylogenetic networks are used to represent the evolutionary history of species. They are versatile when compared to traditional phylogenetic trees, as they capture more complex evolutionary events such as hybridization and horizontal gene…
The construction of a dendogram on a set of individuals is a key component of a genomewide association study. However even with modern sequencing technologies the distances on the individuals required for the construction of such a…
We consider the following graph reconstruction problem: given an unweighted connected graph $G = (V,E)$ with visible vertex set $V$ and an oracle which takes two vertices $u,v \in V$ and returns the shortest path distance between $u$ and…
In phylogenetics, tree-based networks are used to model and visualize the evolutionary history of species where reticulate events such as horizontal gene transfer have occurred. Formally, a tree-based network $N$ consists of a phylogenetic…
The hierarchical structure of the butterfly fractal -- the Hofstader butterfly, is found to be described by an octonary tree. In this framework of building the butterfly graph, every iteration generates sextuplets of butterflies, each with…
Phylogenetic network is an evolutionary model that uses a rooted directed acyclic graph (instead of a tree) to model an evolutionary history of species in which reticulate events (e.g., hybrid speciation or horizontal gene transfer)…
In this note we analyze the performance of a simple root-finding algorithm in uniform attachment trees. The leaf-stripping algorithm recursively removes all leaves of the tree for a carefully chosen number of rounds. We show that, with…
In this paper, we show that every $O(m)$-edge-connected simple graph $G$ of size divisible by $m$ with minimum degree at least $2^{O(m)}$ has an edge-decomposition into isomorphic copies of any given tree $T$ of size $m$. Moreover, the…
A method for creating a forest of model trees to fit samples of a function defined on images is described in several steps: down-sampling the images, determining a tree's hyperplanes, applying convolutions to the hyperplanes to handle small…
The shrinking operation converts a hypergraph into a graph by choosing, from each hyperedge, two endvertices of a corresponding graph edge. A hypertree is a hypergraph which can be shrunk to a tree on the same vertex set. Klimo\v{s}ov\'{a}…
We study the inverse problem of recovering a tree graph together with the weights on its edges (equivalently a metric tree) from the knowledge of the Dirichlet-to-Neumann matrix associated with the Laplacian. We prove an explicit formula…
We consider the problem of finding the smallest graph that contains two input trees each with at most $n$ vertices preserving their distances. In other words, we look for an isometric-universal graph with the minimum number of vertices for…
Given a graph and one of its weighted Laplacian matrix, a Fiedler vector is an eigenvector with respect to the second smallest eigenvalue. The Fiedler vectors have been used widely for graph partitioning, graph drawing, spectral clustering,…
Tree rotations (left and right) are basic local deformations allowing to transform between two unlabeled binary trees of the same size. Hence, there is a natural problem of practically finding such transformation path with low number of…