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Pancreas segmentation in computed tomography imaging has been historically difficult for automated methods because of the large shape and size variations between patients. In this work, we describe a custom-build 3D fully convolutional…

Computer Vision and Pattern Recognition · Computer Science 2018-03-15 Holger Roth , Masahiro Oda , Natsuki Shimizu , Hirohisa Oda , Yuichiro Hayashi , Takayuki Kitasaka , Michitaka Fujiwara , Kazunari Misawa , Kensaku Mori

This paper proposes a fully automated atlas-based pancreas segmentation method from CT volumes utilizing atlas localization by regression forest and atlas generation using blood vessel information. Previous probabilistic atlas-based…

Computer Vision and Pattern Recognition · Computer Science 2020-05-08 Masahiro Oda , Natsuki Shimizu , Ken'ichi Karasawa , Yukitaka Nimura , Takayuki Kitasaka , Kazunari Misawa , Michitaka Fujiwara , Daniel Rueckert , Kensaku Mori

Accurate and automatic organ segmentation from 3D radiological scans is an important yet challenging problem for medical image analysis. Specifically, the pancreas demonstrates very high inter-patient anatomical variability in both its…

Computer Vision and Pattern Recognition · Computer Science 2017-02-02 Holger R. Roth , Le Lu , Nathan Lay , Adam P. Harrison , Amal Farag , Andrew Sohn , Ronald M. Summers

Due to the fact that pancreas is an abdominal organ with very large variations in shape and size, automatic and accurate pancreas segmentation can be challenging for medical image analysis. In this work, we proposed a fully automated two…

Computer Vision and Pattern Recognition · Computer Science 2019-07-29 Ningning Zhao , Nuo Tong , Dan Ruan , Ke Sheng

We propose a novel 3D fully convolutional deep network for automated pancreas segmentation from both MRI and CT scans. More specifically, the proposed model consists of a 3D encoder that learns to extract volume features at different…

Image and Video Processing · Electrical Eng. & Systems 2022-06-29 Federica Proietto Salanitri , Giovanni Bellitto , Ismail Irmakci , Simone Palazzo , Ulas Bagci , Concetto Spampinato

Recent advances in 3D fully convolutional networks (FCN) have made it feasible to produce dense voxel-wise predictions of volumetric images. In this work, we show that a multi-class 3D FCN trained on manually labeled CT scans of several…

Computer Vision and Pattern Recognition · Computer Science 2018-04-13 Holger R. Roth , Hirohisa Oda , Xiangrong Zhou , Natsuki Shimizu , Ying Yang , Yuichiro Hayashi , Masahiro Oda , Michitaka Fujiwara , Kazunari Misawa , Kensaku Mori

Recent advances in 3D fully convolutional networks (FCN) have made it feasible to produce dense voxel-wise predictions of full volumetric images. In this work, we show that a multi-class 3D FCN trained on manually labeled CT scans of seven…

Computer Vision and Pattern Recognition · Computer Science 2017-04-24 Holger R. Roth , Hirohisa Oda , Yuichiro Hayashi , Masahiro Oda , Natsuki Shimizu , Michitaka Fujiwara , Kazunari Misawa , Kensaku Mori

Automatic organ segmentation is an important prerequisite for many computer-aided diagnosis systems. The high anatomical variability of organs in the abdomen, such as the pancreas, prevents many segmentation methods from achieving high…

Computer Vision and Pattern Recognition · Computer Science 2015-09-17 Holger R. Roth , Amal Farag , Le Lu , Evrim B. Turkbey , Ronald M. Summers

Organ segmentation is a prerequisite for a computer-aided diagnosis (CAD) system to detect pathologies and perform quantitative analysis. For anatomically high-variability abdominal organs such as the pancreas, previous segmentation works…

Computer Vision and Pattern Recognition · Computer Science 2014-08-01 Amal Farag , Le Lu , Evrim Turkbey , Jiamin Liu , Ronald M. Summers

Deep neural networks have been widely adopted for automatic organ segmentation from abdominal CT scans. However, the segmentation accuracy of some small organs (e.g., the pancreas) is sometimes below satisfaction, arguably because deep…

Computer Vision and Pattern Recognition · Computer Science 2017-06-22 Yuyin Zhou , Lingxi Xie , Wei Shen , Yan Wang , Elliot K. Fishman , Alan L. Yuille

Efficient organ segmentation is the precondition of various quantitative analysis. Segmenting the pancreas from abdominal CT images is a challenging task because of its high anatomical variability in shape, size and location. What's more,…

Computer Vision and Pattern Recognition · Computer Science 2020-03-10 Jinchan He , Xiaxia Yu , Chudong Cai , Yi Gao

Automatic multi-organ segmentation of the dual energy computed tomography (DECT) data can be beneficial for biomedical research and clinical applications. However, it is a challenging task. Recent advances in deep learning showed the…

Computer Vision and Pattern Recognition · Computer Science 2017-10-17 Shuqing Chen , Holger Roth , Sabrina Dorn , Matthias May , Alexander Cavallaro , Michael M. Lell , Marc Kachelrieß , Hirohisa Oda , Kensaku Mori , Andreas Maier

Recently 3D volumetric organ segmentation attracts much research interest in medical image analysis due to its significance in computer aided diagnosis. This paper aims to address the pancreas segmentation task in 3D computed tomography…

Image and Video Processing · Electrical Eng. & Systems 2019-12-03 Chaowei Fang , Guanbin Li , Chengwei Pan , Yiming Li , Yizhou Yu

We present a method to address the challenging problem of segmentation of lumbar vertebrae from CT images acquired with varying fields of view. Our method is based on cascaded 3D Fully Convolutional Networks (FCNs) consisting of a…

Computer Vision and Pattern Recognition · Computer Science 2017-12-06 Rens Janssens , Guodong Zeng , Guoyan Zheng

Segmentation of pancreas is important for medical image analysis, yet it faces great challenges of class imbalance, background distractions and non-rigid geometrical features. To address these difficulties, we introduce a Deep Q…

Computer Vision and Pattern Recognition · Computer Science 2019-04-22 Yunze Man , Yangsibo Huang , Junyi Feng , Xi Li , Fei Wu

Accurate automatic organ segmentation is an important yet challenging problem for medical image analysis. The pancreas is an abdominal organ with very high anatomical variability. This inhibits traditional segmentation methods from…

Computer Vision and Pattern Recognition · Computer Science 2016-06-28 Holger R. Roth , Le Lu , Amal Farag , Andrew Sohn , Ronald M. Summers

Automatic medical image segmentation, an essential component of medical image analysis, plays an importantrole in computer-aided diagnosis. For example, locating and segmenting the liver can be very helpful in livercancer diagnosis and…

Image and Video Processing · Electrical Eng. & Systems 2019-10-28 Xi Fang , Bo Du , Sheng Xu , Bradford J. Wood , Pingkun Yan

Automatic pancreas segmentation in radiology images, eg., computed tomography (CT) and magnetic resonance imaging (MRI), is frequently required by computer-aided screening, diagnosis, and quantitative assessment. Yet pancreas is a…

Computer Vision and Pattern Recognition · Computer Science 2018-04-02 Jinzheng Cai , Le Lu , Fuyong Xing , Lin Yang

Automatic organ segmentation is an important yet challenging problem for medical image analysis. The pancreas is an abdominal organ with very high anatomical variability. This inhibits previous segmentation methods from achieving high…

Computer Vision and Pattern Recognition · Computer Science 2015-06-23 Holger R. Roth , Le Lu , Amal Farag , Hoo-Chang Shin , Jiamin Liu , Evrim Turkbey , Ronald M. Summers

Automated segmentation of individual calf muscle compartments from 3D magnetic resonance (MR) images is essential for developing quantitative biomarkers for muscular disease progression and its prediction. Achieving clinically acceptable…

Image and Video Processing · Electrical Eng. & Systems 2020-12-23 Zhihui Guo , Honghai Zhang , Zhi Chen , Ellen van der Plas , Laurie Gutmann , Daniel Thedens , Peggy Nopoulos , Milan Sonka
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