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We investigate the behaviour of a finite chain of Brownian particles, interacting through a pairwise quadratic potential, with one end of the chain fixed and the other end pulled away at slow speed, in the limit of slow speed and small…

Probability · Mathematics 2019-12-12 Frank Aurzada , Volker Betz , Mikhail Lifshits

We study the motion of an active Brownian particle (ABP) using overdamped Langevin dynamics on a two-dimensional substrate with periodic array of obstacles and in a quasi-one-dimensional corrugated channel comprised of periodically arrayed…

Soft Condensed Matter · Physics 2019-05-28 Sudipta Pattanayak , Rakesh Das , Manoranjan Kumar , Shradha Mishra

The equilibrium structure and dynamics of a single polymer chain in a thermal solvent is by now well-understood in terms of scaling laws. Here we consider a polymer in a bacterial bath, i.e. in a solvent consisting of active particles which…

Soft Condensed Matter · Physics 2014-07-29 Andreas Kaiser , Hartmut Löwen

We investigate the behaviour of a chain of interacting Brownian particles with one end fixed and the other moving away at slow speed, in the limit of small noise. The interaction between particles is through a pairwise potential with finite…

Probability · Mathematics 2010-07-20 Michael Allman , Volker Betz , Martin Hairer

Heterogeneous distribution of passive and active domains in the chromosome plays a crucial role for its dynamic organization within the cell nucleus. Motivated by that here we investigate the steady-state conformation and dynamics of a…

Soft Condensed Matter · Physics 2024-09-27 Suman Majumder , Subhajit Paul

Small bubbles rising in a chain can self-organize into regular patterns upon reaching a liquid's free surface. This phenomenon is investigated through direct numerical simulations. By varying the bubble release period, distinct branching…

Fluid Dynamics · Physics 2026-02-09 Dabao Li , Lang Qin , Zhigang Zuo , Guangzhao Zhou

We study the dynamics of the passage of a stiff chain through a pore into a cell containing particles that bind reversibly to it. Using Brownian Molecular Dynamics simulations we investigate the mean-first-passage time as a function of the…

Soft Condensed Matter · Physics 2009-11-10 Roya Zandi , David Reguera , Joseph Rudnick , William M. Gelbart

Motility-induced wall aggregation of active Brownian particles (ABPs) is a well-studied phenomenon. Here, we study the aggregation of ABPs on porous walls, which allows the particles to penetrate through at large motility. We show that the…

Soft Condensed Matter · Physics 2020-10-13 Suchismita Das , Raghunath Chelakkot

The transport of active particles may occur in complex environments, in which it emerges from the interplay between the mobility of the active components and the quenched disorder of the environment. Here we explore structural and dynamical…

Soft Condensed Matter · Physics 2023-03-31 Fergus J. Moore , John Russo Tanniemola B. Liverpool , C. Patrick Royall

A micron-sized droplet of bromine water immersed in a surfactant-laden oil phase can swim (S. Thutupalli, R. Seemann, S. Herminghaus, New J. Phys. 13 073021 (2011)). The bromine reacts with the surfactant at the droplet interface and…

Soft Condensed Matter · Physics 2016-08-25 Maximilian Schmitt , Holger Stark

The formation of interface from an initial sharp interface in polydisperse A/B blends is studied using the external potential dynamic method. The present model is a nonlocal coupling model as we take into account the correlation between…

Soft Condensed Matter · Physics 2015-05-13 Shuanhu Qi , Xinghu Zhang , Dadong Yan

We numerically investigate the diffusive behavior of active Brownian particles in a two-dimensional confined channel filled with soft obstacles, whose softness is controlled by a parameter $K$. Here, active particles are subjected to…

Soft Condensed Matter · Physics 2024-10-22 Ankit Gupta , P. S. Burada

Active matter concerns the self-organization of energy consuming elements such as motile bacteria or self-propelled colloids. A canonical example is an active Brownian particle (ABP) that moves at constant speed while its direction of…

Statistical Mechanics · Physics 2023-06-21 Paul C Bressloff

In biology, there are several processes in which unfolded protein chains are transported along narrow-tube channels. Normally, without such a severe configurational constraint, unfolded polypeptides would not bind to each other. However,…

Soft Condensed Matter · Physics 2019-09-19 Gillian M. Fraser , Eugene M. Terentjev

Eukaryotic flagella are active structures with a complex architecture of microtubules, motor proteins and elastic links. They are capable of whiplike motions driven by motors sliding along filaments that are themselves constrained at an…

Soft Condensed Matter · Physics 2012-11-22 Raghunath Chelakkot , Arvind Gopinath , L. Mahadevan , Michael F. Hagan

By introducing the notion of a dynamic overlap concentration scale, we identify universal and previously unreported features of the mechanical properties of active colloids. These features are codified by recognizing that the characteristic…

Soft Condensed Matter · Physics 2021-11-10 Stewart A. Mallory , Ahmad K. Omar , John F. Brady

We investigate a trapping mechanism for passive Brownian particles based on mixtures with self-propelled dipolar colloids. Active dipoles, whose magnetic moment is oriented perpendicularly to their propulsion direction, spontaneously form…

Soft Condensed Matter · Physics 2025-09-18 Arnaud Compagnie , Nicolas Vandewalle , Eric Opsomer

In this paper, we present a theory to efficiently deal with mechanical properties of heterogeneous polymer chain in free space and the central problem is to evaluate the diffusion equation and orientation-orientation correlation function,…

Biological Physics · Physics 2019-11-05 Ming Li , Jizeng Wang

Mesh-like structures, such as mucus gel or cytoskeleton networks, are ubiquitous in biological systems. These intricate structures are composed of cross-linked, semi-flexible bio-filaments, crucial to numerous biological processes. In many…

Soft Condensed Matter · Physics 2024-01-10 Yeongjin Kim , Won Kyu Kim , Jae-Hyung Jeon

The dynamics of filaments in flow are central to understanding a wide range of biological and soft-matter systems, yet their behavior under time-dependent forcing remains poorly understood. Here, we investigate the long-time dynamics of…

Soft Condensed Matter · Physics 2026-01-05 Francesco Bonacci , Brato Chakrabarti , Olivia du Roure , Anke Lindner , David Saintillan
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