Related papers: The lemniscate tree of a random polynomial

In this paper, we find computational formulae for generalized characteristic polynomials of graph bundles. We show that the number of spanning trees in a graph is the partial derivative (at (0,1)) of the generalized characteristic…

We study the problem of learning a node-labeled tree given independent traces from an appropriately defined deletion channel. This problem, tree trace reconstruction, generalizes string trace reconstruction, which corresponds to the tree…

Given a finite planar graph, a grove is a spanning forest in which every component tree contains one or more of a specified set of vertices (called nodes) on the outer face. For the uniform measure on groves, we compute the probabilities of…

We consider the probability that a spanning tree chosen uniformly at random from a graph can be partitioned into a fixed number $k$ of trees of equal size by removing $k-1$ edges. In that case, the spanning tree is called {\em splittable}.…

In this paper, we provide a polynomial time algorithm to calculate the probability of a {\it ranked} gene tree topology for a given species tree, where a ranked tree topology is a tree topology with the internal vertices being ordered. The…

Rooted binary perfect phylogenies provide a generalization of rooted binary unlabeled trees in which each leaf is assigned a positive integer value that corresponds in a biological setting to the count of the number of indistinguishable…

In this paper, we study a regular rooted coloured tree with random labels assigned to its edges, where the distribution of the label assigned to an edge depends on the colours of its endpoints. We obtain some new results relevant to this…

We find surprisingly simple formulas for the limiting probability that the rank of a randomly selected vertex in a randomly selected phylogenetic tree or generalized phylogenetic tree is a given integer.

In mathematical phylogenetics, the time-consistent galled trees provide a simple class of rooted binary network structures that can be used to represent a variety of different biological phenomena. We study the enumerative combinatorics of…

Rooted, weighted continuum random trees are used to describe limits of sequences of random discrete trees. Formally, they are random quadruples $(\mathcal{T},d,r,p)$, where $(\mathcal{T},d)$ is a tree-like metric space, $r\in\mathcal{T}$ is…

Rooted phylogenetic networks allow biologists to represent evolutionary relationships between present-day species by revealing ancestral speciation and hybridization events. A convenient and well-studied class of such networks are…

We consider both analytically and numerically creation conditions of diverse hierarchical trees. A connection between the probabilities to create hierarchical levels and the probability to associate these levels into united structure is…

Inspired by the combinatorial constructions in earlier work of the authors that generalized the classical Alexander polynomial to a large class of spatial graphs with a balanced weight on edges, we show that the value of the Alexander…

We prove that the number of crossings in a random labelled tree with vertices in convex position is asymptotically Gaussian with mean $ n^2/6$ and variance $ n^3/45$. A similar result is proved for points in general position under mild…

We give a short and direct proof of a remarkable identity that arises in the enumeration of labeled trees with respect to their indegree sequence, where all edges are oriented from the vertex with lower label towards the vertex with higher…

Arborified multiple zeta values are a generalization of multiple zeta values associated with rooted trees. There are two types of decorated rooted trees, corresponding respectively to the series and the integral expressions. Manchon…

Here, we find the characteristics polynomial of normalized Laplacian of a tree. The coefficients of this polynomial are expressed by the higher order general Randi\'c indices for matching, whose values depend on the structure of the tree.…

Frequent tree mining asks us to enumerate tree patterns that occur frequently in a database of rooted trees. This problem is motivated by tree-structured data in bioinformatics, such as glycans and pseudoknot-free RNA secondary structures.…

Let $d \geq 3$ be a fixed integer. We give an asympotic formula for the expected number of spanning trees in a uniformly random $d$-regular graph with $n$ vertices. (The asymptotics are as $n\to\infty$, restricted to even $n$ if $d$ is…

In this work we introduce and study various generalizations of the notion of increasingly labelled trees, where the label of a child node is always larger than the label of its parent node, to multilabelled tree families, where the nodes in…