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One important issue implied by the finite nature of real-world networks regards the identification of their more external (border) and internal nodes. The present work proposes a formal and objective definition of these properties, founded…

Physics and Society · Physics 2015-05-13 Bruno A. N. Travencolo , Matheus P. Viana , Luciano da F. Costa

We apply modern methods in computational topology to the task of discovering and characterizing phase transitions. As illustrations, we apply our method to four two-dimensional lattice spin models: the Ising, square ice, XY, and…

Statistical Mechanics · Physics 2021-10-04 Alex Cole , Gregory J. Loges , Gary Shiu

The manifold hypothesis, which assumes that data lies on or close to an unknown manifold of low intrinsic dimension, is a staple of modern machine learning research. However, recent work has shown that real-world data exhibits distinct…

Machine Learning · Computer Science 2023-06-16 Julius von Rohrscheidt , Bastian Rieck

Topological data analysis (TDA), as a relatively recent approach, has demonstrated great potential in capturing the intrinsic and robust structural features of complex data. While persistent homology, as a core tool of TDA, focuses on…

Combinatorics · Mathematics 2025-11-11 Jing-Wen Gao , Yunan He , Jian Liu

In recent years, many techniques have been developed to improve the performance and efficiency of data center networks. While these techniques provide high accuracy, they are often designed using heuristics that leverage domain-specific…

Networking and Internet Architecture · Computer Science 2017-12-13 Christopher Streiffer , Huan Chen , Theophilus Benson , Asim Kadav

Multiplexed imaging allows multiple cell types to be simultaneously visualised in a single tissue sample, generating unprecedented amounts of spatially-resolved, biological data. In topological data analysis, persistent homology provides…

Quantitative Methods · Quantitative Biology 2025-05-06 Maria Torras-Pérez , Iris H. R. Yoon , Praveen Weeratunga , Ling-Pei Ho , Helen M. Byrne , Ulrike Tillmann , Heather A. Harrington

We extend the notion of the distance to a measure from Euclidean space to probability measures on general metric spaces as a way to do topological data analysis in a way that is robust to noise and outliers. We then give an efficient way to…

Computational Geometry · Computer Science 2014-10-09 Mickael Buchet , Frederic Chazal , Steve Y. Oudot , Donald R. Sheehy

Uncovering latent community structure in complex networks is a field that has received an enormous amount of attention. Unfortunately, whilst potentially very powerful, unsupervised methods for uncovering labels based on topology alone has…

Social and Information Networks · Computer Science 2018-06-29 James P Gilbert , Jamie Twycross

We use Topological Data Analysis tools for studying the inner organization of cells in segmented images of epithelial tissues. More specifically, for each segmented image, we compute different persistence barcodes, which codify lifetime of…

Computer Vision and Pattern Recognition · Computer Science 2022-04-11 N. Atienza , M. J. Jimenez , M. Soriano-Trigueros

Neuro-symbolic reasoning systems face fundamental challenges in maintaining semantic coherence while satisfying physical and logical constraints. Building upon our previous work on Ontology Neural Networks, we present an enhanced framework…

Machine Learning · Computer Science 2026-01-12 Jaehong Oh

This paper has three main goals : (1) To give an axiomatic formulation of the construction of "reduced \v{C}ech complexes", complexes using fewer than the usual number of intersections but still computing cohomology of an appropriate class…

Algebraic Geometry · Mathematics 2025-04-21 Mike Roth , Sasha Zotine

This study proposes a new approach that investigates differences in topological characteristics of visual networks, which are constructed using fMRI BOLD time-series corresponding to visual datasets of COCO, ImageNet, and SUN. A publicly…

Image and Video Processing · Electrical Eng. & Systems 2025-10-29 Debanjali Bhattacharya , Neelam Sinha , Yashwanth R. , Amit Chattopadhyay

The so called \v{C}ech and Vietoris-Rips simplicial filtrations are designed to capture information about the topological structure of metric datasets. These filtrations are two of the workhorses in the field of topological data analysis.…

Algebraic Topology · Mathematics 2017-12-05 Samir Chowdhury , Nathaniel Clause , Facundo Memoli , Jose Angel Sanchez , Zoe Wellner

The inner representation of deep neural networks (DNNs) is indecipherable, which makes it difficult to tune DNN models, control their training process, and interpret their outputs. In this paper, we propose a novel approach to investigate…

Machine Learning · Computer Science 2021-06-08 Satoru Watanabe , Hayato Yamana

High order networks are weighted hypergraphs col- lecting relationships between elements of tuples, not necessarily pairs. Valid metric distances between high order networks have been defined but they are difficult to compute when the…

Social and Information Networks · Computer Science 2016-05-04 Weiyu Huang , Alejandro Ribeiro

Topological features based on persistent homology capture high-order structural information so as to augment graph neural network methods. However, computing extended persistent homology summaries remains slow for large and dense graphs and…

Machine Learning · Computer Science 2022-11-16 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Yusu Wang , Chao Chen

In this work, we develop a pipeline that associates Persistence Diagrams to digital data via the most appropriate filtration for the type of data considered. Using a grid search approach, this pipeline determines optimal representation…

Computer Vision and Pattern Recognition · Computer Science 2023-09-28 Francesco Conti , Davide Moroni , Maria Antonietta Pascali

Topological data analysis computes and analyses topological features of the point clouds by constructing and studying a simplicial representation of the underlying topological structure. The enthusiasm that followed the initial successes of…

Computational Geometry · Computer Science 2019-06-21 Naheed Anjum Arafat , Debabrota Basu , Stéphane Bressan

Within the context of topological data analysis, the problems of identifying topological significance and matching signals across datasets are important and useful inferential tasks in many applications. The limitation of existing solutions…

Algebraic Topology · Mathematics 2024-06-26 Inés García-Redondo , Anthea Monod , Anna Song

The homological scaffold leverages persistent homology to construct a topologically sound summary of a weighted network. However, its crucial dependency on the choice of representative cycles hinders the ability to trace back global…

Algebraic Topology · Mathematics 2021-01-05 Marco Guerra , Alessandro De Gregorio , Ulderico Fugacci , Giovanni Petri , Francesco Vaccarino