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A single protein molecule is regarded as a contact network of amino-acid residues. Some studies have indicated that this network is a small world network (SWN), while other results have implied that this is a fractal network (FN). However,…

Biological Physics · Physics 2009-11-13 Hidetoshi Morita , Mitsunori Takano

Simultaneous analyses are performed for cross section data of elastic scattering, fusion, Coulomb breakup, and other direct yields for the $^{6}$He+$^{209}$Bi system at near-Coulomb-barrier energies. The bare and dynamical polarization…

Nuclear Theory · Physics 2024-02-08 H. M. Maridi , N. Keeley , K. Rusek

The cross section for the diffractive deep-inelastic scattering process ep -> e X p is measured, with the leading final state proton detected in the H1 Forward Proton Spectrometer. The data sample covers the range x_pom<0.1 in fractional…

High Energy Physics - Experiment · Physics 2012-08-27 H1 Collaboration

Percolation theory is applied to the phase-transition dynamics of domain pattern formation in segregating binary Bose--Einstein condensates in quasi-two-dimensional systems. Our finite-size-scaling analysis shows that the percolation…

Quantum Gases · Physics 2015-10-14 Hiromitsu Takeuchi , Yumiko Mizuno , Kentaro Dehara

Both the deterministic and stochastic sandpile models are studied on the percolation backbone, a random fractal, generated on a square lattice in $2$-dimensions. In spite of the underline random structure of the backbone, the deterministic…

Statistical Mechanics · Physics 2020-05-20 Himangsu Bhaumik , S. B. Santra

We review the critical behavior of nonequilibrium systems, such as directed percolation (DP) and branching-annihilating random walks (BARW), which possess phase transitions into absorbing states. After reviewing the bulk scaling behavior of…

Statistical Mechanics · Physics 2009-11-07 P. Frojdh , M. Howard , K. B. Lauritsen

We propose a simulation model to study the properties of directed percolation in two-dimensional (2D) anisotropic random media. The degree of anisotropy in the model is given by the ratio $\mu$ between the axes of a semi-ellipse enclosing…

Condensed Matter · Physics 2009-10-30 V. Lien Nguyen , Enrique Canessa

The ability to computationally generate novel yet physically foldable protein structures could lead to new biological discoveries and new treatments targeting yet incurable diseases. Despite recent advances in protein structure prediction,…

Biomolecules · Quantitative Biology 2022-11-28 Kevin E. Wu , Kevin K. Yang , Rianne van den Berg , James Y. Zou , Alex X. Lu , Ava P. Amini

The event graph representation of temporal networks suggests that the connectivity of temporal structures can be mapped to a directed percolation problem. However, similar to percolation theory on static networks, this mapping is valid…

Physics and Society · Physics 2023-06-13 Arash Badie-Modiri , Abbas K. Rizi , Márton Karsai , Mikko Kivelä

Directed percolation is one of the generic universality classes for dynamic processes. We study the crossover from isotropic to directed percolation by representing the combined problem as a random cluster model, with a parameter $r$…

Condensed Matter · Physics 2009-10-28 Per Frojdh , Marcel den Nijs

We relate various concepts of fractal dimension of the limiting set C in fractal percolation to the dimensions of the set consisting of connected components larger than one point and its complement in C (the "dust"). In two dimensions, we…

Probability · Mathematics 2012-03-08 Erik Broman , Federico Camia , Matthijs Joosten , Ronald Meester

The relaxation of an elastic network, constructed by a contact map of a fractal (crumpled) polymer globule is investigated. We found that: i) the slowest mode of the network is separated from the rest of the spectrum by a wide gap, and ii)…

Statistical Mechanics · Physics 2015-06-15 V. A. Avetisov , V. A. Ivanov , D. A. Meshkov , S. K. Nechaev

Background: The influence of halo structure of $^6$He, $^8$B, $^{11}$Be and $^{11}$Li nuclei in several mechanisms such as direct reactions and fusion is already established, although not completely understood. The influence of the $^{10}$C…

By studying its subgraphs, it is argued that the lower critical percolation threshold of the enhanced binary tree (EBT) is bounded as $p_{c1} < 0.355059$, while the upper threshold is bounded both from above and below by 1/2 according to…

Statistical Mechanics · Physics 2011-02-17 Seung Ki Baek , Petter Minnhagen

In high dimensional percolation at parameter $p < p_c$, the one-arm probability $\pi_p(n)$ is known to decay exponentially on scale $(p_c - p)^{-1/2}$. We show the same statement for the ratio $\pi_p(n) / \pi_{p_c}(n)$, establishing a form…

Probability · Mathematics 2021-08-02 Shirshendu Chatterjee , Jack Hanson , Philippe Sosoe

We show analytically that the $[0,1]$, $[1,1]$ and $[2,1]$ Pad{\'e} approximants of the mean cluster number $S(p)$ for site and bond percolation on general $d$-dimensional lattices are upper bounds on this quantity in any Euclidean…

Statistical Mechanics · Physics 2015-06-12 Salvatore Torquato , Yang Jiao

During the last few years, serial electron crystallography (Serial Electron Diffraction, SerialED) has been gaining attention for the structure determination of crystalline compounds that are sensitive to the irradiation of the electron…

Materials Science · Physics 2025-07-29 Sergi Plana-Ruiz , Penghan Lu , Govind Ummethala , Rafal Dunin-Borkowski

A matching algorithm for the identification of backbones in percolation problems is introduced. Using this procedure, percolation backbones are studied in two- to five-dimensional systems containing 1.7x10^7 sites, two orders of magnitude…

Statistical Mechanics · Physics 2015-06-25 Cristian F. Moukarzel

A Dubins path is a shortest path with bounded curvature. The seminal result in non-holonomic motion planning is that (in the absence of obstacles) a Dubins path consists either from a circular arc followed by a segment followed by another…

Discrete Mathematics · Computer Science 2012-11-14 Sylvester Eriksson-Bique , David Kirkpatrick , Valentin Polishchuk

A new position-space renormalization group approach is investigated for bond directed percolation in two dimensions. The threshold value for the bond occupation probabilities is found to be $p_c=0.6443$. Correlation length exponents on time…

Statistical Mechanics · Physics 2015-06-25 H. Kaya , A. Erzan