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Automated protein function prediction is a challenging problem with distinctive features, such as the hierarchical organization of protein functions and the scarcity of annotated proteins for most biological functions. We propose a…

Machine Learning · Statistics 2019-04-09 Marco Frasca , Nicolò Cesa Bianchi

Consider a sequential active learning problem where, at each round, an agent selects a batch of unlabeled data points, queries their labels and updates a binary classifier. While there exists a rich body of work on active learning in this…

Machine Learning · Computer Science 2020-05-26 Abbas Kazerouni , Qi Zhao , Jing Xie , Sandeep Tata , Marc Najork

Positive-Unlabeled (PU) learning tries to learn binary classifiers from a few labeled positive examples with many unlabeled ones. Compared with ordinary semi-supervised learning, this task is much more challenging due to the absence of any…

Machine Learning · Computer Science 2022-12-07 Yunrui Zhao , Qianqian Xu , Yangbangyan Jiang , Peisong Wen , Qingming Huang

Classification, the process of assigning a label (or class) to an observation given its features, is a common task in many applications. Nonetheless in most real-life applications, the labels can not be fully explained by the observed…

Machine Learning · Statistics 2018-11-07 Johan Barthélemy , Morgane Dumont , Timoteo Carletti

Class-level evaluation can conceal substantial performance disparities across subconcepts within the same class, causing models that perform well on average to fail on specific subpopulations. Prior work has shown that common evaluation…

Machine Learning · Computer Science 2026-04-30 Taylor Maxson , Roberto Corizzo , Yaning Wu , Nathalie Japkowicz , Colin Bellinger

Existing semi-supervised learning (SSL) algorithms typically assume class-balanced datasets, although the class distributions of many real-world datasets are imbalanced. In general, classifiers trained on a class-imbalanced dataset are…

Machine Learning · Computer Science 2021-10-22 Hyuck Lee , Seungjae Shin , Heeyoung Kim

Class imbalance is a pervasive issue among classification models including deep learning, whose capacity to extract task-specific features is affected in imbalanced settings. However, the challenges of handling imbalance among a large…

Machine Learning · Computer Science 2018-10-31 Shin Ando

We consider the problem of estimating the class prior in an unlabeled dataset. Under the assumption that an additional labeled dataset is available, the class prior can be estimated by fitting a mixture of class-wise data distributions to…

Machine Learning · Computer Science 2016-11-08 Marthinus C. du Plessis , Gang Niu , Masashi Sugiyama

Predicting all applicable labels for a given image is known as multi-label classification. Compared to the standard multi-class case (where each image has only one label), it is considerably more challenging to annotate training data for…

Computer Vision and Pattern Recognition · Computer Science 2021-10-25 Elijah Cole , Oisin Mac Aodha , Titouan Lorieul , Pietro Perona , Dan Morris , Nebojsa Jojic

Deep neural networks have been shown to be very powerful methods for many supervised learning tasks. However, they can also easily overfit to training set biases, i.e., label noise and class imbalance. While both learning with noisy labels…

Computer Vision and Pattern Recognition · Computer Science 2021-10-25 Tong Wei , Jiang-Xin Shi , Yu-Feng Li , Min-Ling Zhang

Partial-label learning is a kind of weakly-supervised learning with inexact labels, where for each training example, we are given a set of candidate labels instead of only one true label. Recently, various approaches on partial-label…

Machine Learning · Computer Science 2022-08-30 Zhenguo Wu , Jiaqi Lv , Masashi Sugiyama

Learning algorithms normally assume that there is at most one annotation or label per data point. However, in some scenarios, such as medical diagnosis and on-line collaboration,multiple annotations may be available. In either case,…

Machine Learning · Computer Science 2012-03-19 Yan Yan , Romer Rosales , Glenn Fung , Jennifer Dy

Active learning aims to select samples to be annotated that yield the largest performance improvement for the learning algorithm. Many methods approach this problem by measuring the informativeness of samples and do this based on the…

Machine Learning · Computer Science 2021-08-02 Javad Zolfaghari Bengar , Bogdan Raducanu , Joost van de Weijer

Active learning is of great interest for many practical applications, especially in industry and the physical sciences, where there is a strong need to minimize the number of costly experiments necessary to train predictive models. However,…

Machine Learning · Computer Science 2021-12-23 Maryam Pardakhti , Nila Mandal , Anson W. K. Ma , Qian Yang

Active learning aims to alleviate the amount of labor involved in data labeling by automating the selection of unlabeled samples via an acquisition function. For example, variational adversarial active learning (VAAL) leverages an…

Machine Learning · Computer Science 2024-08-26 Zongyao Lyu , William J. Beksi

Semi-supervised learning is a powerful technique for leveraging unlabeled data to improve machine learning models, but it can be affected by the presence of ``informative'' labels, which occur when some classes are more likely to be labeled…

Machine Learning · Statistics 2023-02-16 Aude Sportisse , Hugo Schmutz , Olivier Humbert , Charles Bouveyron , Pierre-Alexandre Mattei

Active learning is a paradigm of machine learning which aims at reducing the amount of labeled data needed to train a classifier. Its overall principle is to sequentially select the most informative data points, which amounts to determining…

Statistics Theory · Mathematics 2022-09-01 Christophe Denis , Mohamed Hebiri , Boris Ndjia Njike , Xavier Siebert

Pretext Invariant Representation Learning (PIRL) followed by Supervised Fine-Tuning (SFT) has become a standard paradigm for learning with limited labels. We extend this approach to the Positive Unlabeled (PU) setting, where only a small…

Machine Learning · Computer Science 2025-04-11 Anish Acharya , Li Jing , Bhargav Bhushanam , Dhruv Choudhary , Michael Rabbat , Sujay Sanghavi , Inderjit S Dhillon

Optimal design for model training is a critical topic in machine learning. Active Learning aims at obtaining improved models by querying samples with maximum uncertainty according to the estimation model for artificially labeling; this has…

For protein sequence datasets, unlabeled data has greatly outpaced labeled data due to the high cost of wet-lab characterization. Recent deep-learning approaches to protein prediction have shown that pre-training on unlabeled data can yield…

Machine Learning · Computer Science 2020-12-02 Pascal Sturmfels , Jesse Vig , Ali Madani , Nazneen Fatema Rajani
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