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Statistical models of evolution are algebraic varieties in the space of joint probability distributions on the leaf colorations of a phylogenetic tree. The phylogenetic invariants of a model are the polynomials which vanish on the variety.…

Populations and Evolution · Quantitative Biology 2007-05-23 Bernd Sturmfels , Seth Sullivant

Solving systems of polynomial equations, particularly those with finitely many solutions, is a crucial challenge across many scientific fields. Traditional methods like Gr\"obner and Border bases are fundamental but suffer from high…

Machine Learning · Computer Science 2025-05-30 Hiroshi Kera , Nico Pelleriti , Yuki Ishihara , Max Zimmer , Sebastian Pokutta

Two models were recently proposed to explore the robust hardness of Gr\"obner basis computation. Given a polynomial system, both models allow an algorithm to selectively ignore some of the polynomials: the algorithm is only responsible for…

Symbolic Computation · Computer Science 2018-07-18 Gwen Spencer

Phylogenomics is a new field which applies to tools in phylogenetics to genome data. Due to a new technology and increasing amount of data, we face new challenges to analyze them over a space of phylogenetic trees. Because a space of…

Combinatorics · Mathematics 2020-05-15 Ruriko Yoshida

By affine arithmetic is meant the set of affine consequences of Peano arithmetic. This is a continuous theory which is studied in the framework of affine logic, a sublogic of continuous logic. Affine arithmetic is undecidable. Also, its…

Logic · Mathematics 2025-11-19 Seyed-Mohammad Bagheri

We develop the algebraic polynomial theory for "supertropical algebra," as initiated earlier over the real numbers by the first author. The main innovation there was the introduction of "ghost elements," which also play the key role in our…

Commutative Algebra · Mathematics 2009-12-07 Zur Izhakian , Louis Rowen

We consider constrained optimization problems defined in the tropical algebra setting on a linearly ordered, algebraically complete (radicable) idempotent semifield (a semiring with idempotent addition and invertible multiplication). The…

Optimization and Control · Mathematics 2021-10-12 Nikolai Krivulin

The purpose of this paper is fourfold. The first is to develop the theory of tropical differential algebraic geometry from scratch; the second is to present the tropical fundamental theorem for differential algebraic geometry, and show how…

Algebraic Geometry · Mathematics 2021-11-16 Ethan Cotterill , Cristhian Garay , Johana Luviano

We fix the supports A=(A_1,...,A_k) of a list of tropical polynomials and define the tropical resultant TR(A) to be the set of choices of coefficients such that the tropical polynomials have a common solution. We prove that TR(A) is the…

Algebraic Geometry · Mathematics 2016-08-12 Anders Jensen , Josephine Yu

We develop algebraic tools for statistical inference from samples of rotation matrices. This rests on the theory of D-modules in algebraic analysis. Noncommutative Gr\"obner bases are used to design numerical algorithms for maximum…

Statistics Theory · Mathematics 2020-12-30 Michael F. Adamer , András C. Lőrincz , Anna-Laura Sattelberger , Bernd Sturmfels

The aim of this paper is to give a constructive proof of one of the basic theorems of tropical geometry: given a point on a tropical variety (defined using initial ideals), there exists a Puiseux-valued ``lift'' of this point in the…

Algebraic Geometry · Mathematics 2009-07-28 Anders Nedergaard Jensen , Hannah Markwig , Thomas Markwig

Tropical polytopes are images of polytopes in an affine space over the Puiseux series field under the degree map. This viewpoint gives rise to a family of cellular resolutions of monomial ideals which generalize the hull complex of Bayer…

Combinatorics · Mathematics 2012-02-13 Mike Develin , Josephine Yu

It has been shown previously that a large class of monomial maps equivariant under the action of an infinite symmetric group have finitely generated kernels up to the symmetric action. We prove that these symmetric toric ideals also have…

Commutative Algebra · Mathematics 2016-04-29 Robert Krone

Let $A=K[a_1,\ldots,a_n]$ be a weighted $\mathbb{N}$-filtered solvable polynomial algebra with filtration $FA=\{ F_pA\}_{p\in\mathbb{N}}$, where solvable polynomial algebras are in the sense of (A. Kandri-Rody and V. Weispfenning,…

Rings and Algebras · Mathematics 2014-01-23 Huishi Li

In this note we provide an algorithm for computing the fractional integrals of orthogonal polynomials, which is more stable than that using the expression of the polynomials w.r.t. the canonical basis. This algorithm is aimed at solving…

Numerical Analysis · Mathematics 2022-07-27 P. Amodio , L. Brugnano , F. Iavernaro

We compute the Galois cohomology of any $p$-adic valuation field extension of a pre-perfectoid field. Moreover, we obtain a generalization and also a new proof of the classical results of Tate and Hyodo on discrete valuation fields, without…

Algebraic Geometry · Mathematics 2025-02-21 Tongmu He

Let $V$ be a complete discrete valuation ring with residue field $\mathbb{F}$. We define a cyclic homology theory for algebras over $\mathbb{F}$, by lifting them to free algebras over $V$, which we enlarge to tube algebras and complete…

K-Theory and Homology · Mathematics 2024-10-29 Ralf Meyer , Devarshi Mukherjee

Polynomial system solving is a classical problem in mathematics with a wide range of applications. This makes its complexity a fundamental problem in computer science. Depending on the context, solving has different meanings. In order to…

Symbolic Computation · Computer Science 2013-07-16 Jean-Charles Faugère , Pierrick Gaudry , Louise Huot , Guénaël Renault

In this note, we generalize the technique developed in [13] and prove that every 5xn matrix of tropical rank at most 3 has Kapranov rank at most 3, for the ground field that contains at least 4 elements. For the ground field either F_2 or…

Combinatorics · Mathematics 2012-07-20 Yaroslav Shitov

This work tackles the problem of characterizing and understanding the decision boundaries of neural networks with piecewise linear non-linearity activations. We use tropical geometry, a new development in the area of algebraic geometry, to…

Machine Learning · Computer Science 2022-08-24 Motasem Alfarra , Adel Bibi , Hasan Hammoud , Mohamed Gaafar , Bernard Ghanem
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