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We develop novel methods for using persistent homology to infer the homology of an unknown Riemannian manifold $(M, g)$ from a point cloud sampled from an arbitrary smooth probability density function. Standard distance-based filtered…

Computational Geometry · Computer Science 2022-01-07 Abigail Hickok

The combination of persistent homology and discrete Morse theory has proven very effective in visualizing and analyzing big and heterogeneous data. Indeed, topology provides computable and coarse summaries of data independently from…

Computational Geometry · Computer Science 2021-02-12 Claudia Landi , Sara Scaramuccia

We propose the labeled \v{C}ech complex, the plain labeled Vietoris-Rips complex, and the locally scaled labeled Vietoris-Rips complex to perform persistent homology inference of decision boundaries in classification tasks. We provide…

Machine Learning · Statistics 2018-05-28 Karthikeyan Natesan Ramamurthy , Kush R. Varshney , Krishnan Mody

In this paper we present a new approach to computing homology (with field coefficients) and persistent homology. We use concepts from discrete Morse theory, to provide an algorithm which can be expressed solely in terms of simple graph…

Algebraic Topology · Mathematics 2012-10-26 Paweł Dłotko , Hubert Wagner

We consider persistent homology obtained by applying homology to the open Rips filtration of a compact metric space $(X,d)$. We show that each decrease in zero-dimensional persistence and each increase in one-dimensional persistence is…

Algebraic Topology · Mathematics 2024-11-13 Peter Goričan , Žiga Virk

The Vietoris-Rips filtration is a versatile tool in topological data analysis. It is a sequence of simplicial complexes built on a metric space to add topological structure to an otherwise disconnected set of points. It is widely used…

Computational Geometry · Computer Science 2013-03-07 Donald R. Sheehy

Persistent homology is a common technique in topological data analysis providing geometrical and topological information about the sample space. All this information, known as topological features, is summarized in persistence diagrams, and…

Methodology · Statistics 2022-04-05 Asael Fabian Martínez

We discuss and review recent developments in the area of applied algebraic topology, such as persistent homology and barcodes. In particular, we discuss how these are related to understanding more about manifold learning from random point…

Probability · Mathematics 2015-03-13 Robert J. Adler , Omer Bobrowski , Matthew S. Borman , Eliran Subag , Shmuel Weinberger

Persistent homology is a powerful mathematical tool that summarizes useful information about the shape of data allowing one to detect persistent topological features while one adjusts the resolution. However, the computation of such…

Quantum Physics · Physics 2022-03-01 Bernardo Ameneyro , Vasileios Maroulas , George Siopsis

We consider the problem of efficiently computing a discrete Morse complex on simplicial complexes of arbitrary dimension and very large size. Based on a common graph-based formalism, we analyze existing data structures for simplicial…

Computational Geometry · Computer Science 2018-11-13 Ulderico Fugacci , Federico Iuricich , Leila De Floriani

We give an $O(n^2(k+\log n))$ algorithm for computing the $k$-dimensional persistent homology of a filtration of clique complexes of cyclic graphs on $n$ vertices. This is nearly quadratic in the number of vertices $n$, and therefore a…

Computational Geometry · Computer Science 2019-10-15 Henry Adams , Ethan Coldren , Sean Willmot

Assume that a finite set of points is randomly sampled from a subspace of a metric space. Recent advances in computational topology have provided several approaches to recovering the geometric and topological properties of the underlying…

Algebraic Topology · Mathematics 2021-01-29 Peter Bubenik , Peter T. Kim

Persistent homology, a powerful mathematical tool for data analysis, summarizes the shape of data through tracking topological features across changes in different scales. Classical algorithms for persistent homology are often constrained…

Quantum Physics · Physics 2024-02-28 Bernardo Ameneyro , George Siopsis , Vasileios Maroulas

Computation of persistent homology of simplicial representations such as the Rips and the C\v{e}ch complexes do not efficiently scale to large point clouds. It is, therefore, meaningful to devise approximate representations and evaluate the…

Computational Geometry · Computer Science 2020-09-29 Naheed Anjum Arafat , Debabrota Basu , Stéphane Bressan

Persistence diagrams are efficient descriptors of the topology of a point cloud. As they do not naturally belong to a Hilbert space, standard statistical methods cannot be directly applied to them. Instead, feature maps (or representations)…

Probability · Mathematics 2020-12-01 Vincent Divol , Wolfgang Polonik

We construct a nerve functor parametrized by a choice of quantale, exhibiting both the Vietoris-Rips complex and the magnitude nerve as instances of this nerve for different choices of monoidal structure on $\mathbb{R}$. Furthermore, the…

Algebraic Topology · Mathematics 2020-03-10 Simon Cho

In topological data analysis, persistent homology is used to study the "shape of data". Persistent homology computations are completely characterized by a set of intervals called a bar code. It is often said that the long intervals…

Computational Geometry · Computer Science 2025-02-19 Peter Bubenik , Michael Hull , Dhruv Patel , Benjamin Whittle

Topological data analysis, as a tool for extracting topological features and characterizing geometric shapes, has experienced significant development across diverse fields. Its key mathematical techniques include persistent homology and the…

Algebraic Topology · Mathematics 2024-04-19 Jian Liu , Dong Chen , Guo-Wei Wei

In this paper, we present a mathematical and algorithmic framework for the continuation of point clouds by persistence diagrams. A key property used in the method is that the persistence map, which assigns a persistence diagram to a point…

Numerical Analysis · Mathematics 2016-10-12 Marcio Gameiro , Yasuaki Hiraoka , Ippei Obayashi

The fingerprint classification problem is to sort fingerprints into pre-determined groups, such as arch, loop, and whorl. It was asserted in the literature that minutiae points, which are commonly used for fingerprint matching, are not…

Machine Learning · Statistics 2017-11-28 Noah Giansiracusa , Robert Giansiracusa , Chul Moon