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Parsing Expression Grammars (PEGs) are a formalism that can describe all deterministic context-free languages through a set of rules that specify a top-down parser for some language. PEGs are easy to use, and there are efficient…

Formal Languages and Automata Theory · Computer Science 2014-02-17 Sérgio Medeiros , Fabio Mascarenhas , Roberto Ierusalimschy

Quantitative Systems Pharmacology (QSP) modeling is essential for drug development but it requires significant time investment that limits the throughput of domain experts. We present \textbf{GRASP} -- a multi-agent, graph-reasoning…

Machine Learning · Computer Science 2025-12-08 Omid Bazgir , Vineeth Manthapuri , Ilia Rattsev , Mohammad Jafarnejad

Traditional Semantic Table Interpretation (STI) methods rely primarily on the underlying table data to create semantic annotations. This year's SemTab challenge introduced the ``Metadata to KG'' track, which focuses on performing STI by…

Computation and Language · Computer Science 2024-09-24 Margherita Martorana , Xueli Pan , Benno Kruit , Tobias Kuhn , Jacco van Ossenbruggen

The Functional Machine Calculus (FMC), recently introduced by the authors, is a generalization of the lambda-calculus which may faithfully encode the effects of higher-order mutable store, I/O and probabilistic/non-deterministic input.…

Logic in Computer Science · Computer Science 2023-02-07 Chris Barrett , Willem Heijltjes , Guy McCusker

Standard transformer-based language models, while powerful for general text, often struggle with the fine-grained syntax and entity relationships in complex technical, engineering documents. To address this, we propose the Contextual Graph…

Computation and Language · Computer Science 2025-08-05 Karan Reddy , Mayukha Pal

Machine learning models that take computer program source code as input typically use Natural Language Processing (NLP) techniques. However, a major challenge is that code is written using an open, rapidly changing vocabulary due to, e.g.,…

Machine Learning · Computer Science 2019-05-21 Milan Cvitkovic , Badal Singh , Anima Anandkumar

An Abstract Graph Machine(AGM) is an abstract model for distributed memory parallel stabilizing graph algorithms. A stabilizing algorithm starts from a particular initial state and goes through series of different state changes until it…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-04-29 Thejaka Amila Kanewala , Marcin Zalewski , Andrew Lumsdaine

Modern processors deploy a variety of weak memory models, which for efficiency reasons may execute instructions in an order different to that specified by the program text. The consequences of instruction reordering can be complex and…

Logic in Computer Science · Computer Science 2018-12-05 Robert J. Colvin , Graeme Smith

Multiple-choice QA benchmarks usually evaluate small language models (SLMs) as direct answerers, but deployed language-model systems increasingly rely on external scaffolds such as tools, code, and repeated model calls. We introduce…

Information Retrieval · Computer Science 2026-05-20 Prateek Biswas , Dhaval Patel , Vedant Khandelwal , Shuxin Lin , Amit Sheth

We introduce a high-level graphical framework for designing and analysing quantum error correcting codes, centred on what we term the coherent parity check (CPC). The graphical formulation is based on the diagrammatic tools of the…

Quantum Physics · Physics 2023-08-21 Nicholas Chancellor , Aleks Kissinger , Joschka Roffe , Stefan Zohren , Dominic Horsman

Existing code similarity metrics, such as BLEU, CodeBLEU, and TSED, largely rely on surface-level string overlap or abstract syntax tree structures, and often fail to capture deeper semantic relationships between programs.We propose CSSG…

Programming Languages · Computer Science 2026-01-15 Yiyang Lu , Jingwen Xu , Changze Lv , Zisu Huang , Zhengkang Guo , Zhengyuan Wang , Muzhao Tian , Xuanjing Huang , Xiaoqing Zheng

The complexity of molecular and cellular processes forces experimental studies to focus on subsystems. To study the functioning of biological systems across levels of structural and functional organisation, we require tools to compose and…

Molecular Networks · Quantitative Biology 2026-01-26 Adittya Chaudhuri , Ralf Köhl , Olaf Wolkenhauer

Weir has defined a hierarchy of language classes whose second member ($\mathcal{L}_2$) is generated by tree-adjoining grammars (TAG), linear indexed grammars (LIG), combinatory categorial grammars, and head grammars. The hierarchy is…

Formal Languages and Automata Theory · Computer Science 2023-06-07 Alexandra Butoi , Ryan Cotterell , David Chiang

The formalization of process algebras usually starts with a minimal core of operators and rules for its transition system, and then relax the system to improve its usability and ease the proofs. In the calculus of communicating systems…

Formal Languages and Automata Theory · Computer Science 2020-05-15 Clément Aubert , Ioana Cristescu

Timed Concurrent Constraint Programming (tcc) is a declarative model for concurrency offering a logic for specifying reactive systems, i.e. systems that continuously interact with the environment. The universal tcc formalism (utcc) is an…

Logic in Computer Science · Computer Science 2020-02-19 Moreno Falaschi , Carlos Olarte , Catuscia Palamidessi

Formal/symbolic semantics can provide canonical, rigid controllability and interpretability to sentence representations due to their \textit{localisation} or \textit{composition} property. How can we deliver such property to the current…

Computation and Language · Computer Science 2025-07-02 Yingji Zhang , Danilo S. Carvalho , André Freitas

Binary code analysis is widely used to assess a program's correctness, performance, and provenance. Binary analysis applications often construct control flow graphs, analyze data flow, and use debugging information to understand how machine…

Laboratory workflows in pharmaceutical and biomedical research encode substantial tacit knowledge -- expert judgment about failure conditions, decision branching logic, and contextual dependencies -- that remains inaccessible to protocol…

Different from previous surveys in semantic parsing (Kamath and Das, 2018) and knowledge base question answering(KBQA)(Chakraborty et al., 2019; Zhu et al., 2019; Hoffner et al., 2017) we try to takes a different perspective on the study of…

Computation and Language · Computer Science 2021-08-23 Pawan Kumar , Srikanta Bedathur

The verification of multithreaded software is still a challenge. This comes mainly from the fact that the number of thread interleavings grows exponentially in the number of threads. The idea that thread interleavings can be studied with a…

Logic in Computer Science · Computer Science 2011-09-27 Robert Mittermayr , Johann Blieberger
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