Related papers: The Cavender-Farris-Neyman Model with a Molecular …
In the framework of classical field theory, we first review the Noether theory of symmetries, with simple rederivations of its essential results, with special emphasis given to the Noether identities for gauge theories. Will this baggage on…
In this paper we motivate, formulate and analyze the Multi-Configuration Time-Dependent Hartree-Fock (MCTDHF) equations for molecular systems under Coulomb interaction. They consist in approximating the N-particle Schrodinger wavefunction…
We classify the Fibonacci chains (F-chains) by their index sequences and construct an approximately finite dimensional (AF) $C^*$-algebra on the space of F-chains as Connes did on the space of Penrose tiling. The K-theory on this AF-algebra…
We show that the toric variety of the permutohedron (=permutohedral space) has the structure of a cocommutative bimonoid in species, with multiplication/comultiplication given by embedding/projecting-onto boundary divisors. In terms of…
The computational complexity of time-dependent perturbation theory is well-known to be largely combinatorial whatever the chosen expansion method and family of parameters (combinatorial sequences, Goldstone and other Feynman-type…
A cosmological polytope is defined for a given Feynman diagram, and its canonical form may be used to compute the contribution of the Feynman diagram to the wavefunction of certain cosmological models. Given a subdivision of a polytope, its…
We study a rational matroid invariant, obtained as the tropicalization of the Feynman period integral. It equals the volume of the polar of the matroid polytope and we give efficient formulas for its computation. This invariant is proven to…
The classical matrix tree theorem relates the number of spanning trees of a connected graph with the product of the nonzero eigenvalues of its Laplacian matrix. The class of regular matroids generalizes that of graphical matroids, and a…
We prove the structure theorem of the intersection complexes of toric varieties in the category of mixed Hodge modules. This theorem is due to Bernstein, Khovanskii and MacPherson for the underlying complexes with rational coefficients. As…
Periodic trees are combinatorial structures which are in bijection with cluster tilting objects in cluster categories of affine type $\tilde{A}_{n-1}$. The internal edges of the tree encode the $c$-vectors corresponding to the cluster…
In this paper we generalize the $j$-invariant criterion for the semistable reduction type of an elliptic curve to superelliptic curves $X$ given by $y^{n}=f(x)$. We first define a set of tropical invariants for $f(x)$ using symmetrized…
We introduce new methods for phylogenetic tree quartet construction by using machine learning to optimize the power of phylogenetic invariants. Phylogenetic invariants are polynomials in the joint probabilities which vanish under a model of…
In the last years, algebraic tools have been proven useful in phylogenetic reconstruction and model selection through the study of phylogenetic invariants. However, up to now, the models studied from an algebraic viewpoint are either too…
A key result in equivariant symplectic geometry is Delzant's classification of compact connected symplectic toric manifolds. The moment map induces an embedding of the quotient of the manifold by the torus action into the dual of the Lie…
This paper investigates the Poisson geometry associated to a cluster algebra over the complex numbers, and its relationship to compatible torus actions. We show, under some assumptions, that each Noetherian cluster algebra has only finitely…
We extend the definitions of Chern-Schwartz-MacPherson (CSM) cycles of matroids to tropical manifolds. To do this, we provide an alternate description of CSM cycles of matroids which is invariant under integer affine transformations.…
In this paper we apply new geometric and combinatorial methods to the study of phylogenetic mixtures. The focus of the geometric approach is to describe the geometry of phylogenetic mixture distributions for the two state random cluster…
The tropical row span and column span of a real matrix are, from the polyhedral point of view, different objects living in different ambient spaces. These polytopes are known to be combinatorially isomorphic as polyhedral complexes; we…
In this paper, we study the subvarieties of a complex flag variety that are invariant under the action of a maximal torus. Using combinatorial techniques derived from matroid theory, we introduce a decomposition of this variety into affine,…
A correspondence exists between affine tropical varieties and algebraic objects, following the classical Zariski correspondence between irreducible affine varieties and the prime spectrum of the coordinate algebra in affine algebraic…