Related papers: Minimum Segmentation for Pan-genomic Founder Recon…
In length-constrained minimum spanning tree (MST) we are given an $n$-node graph $G = (V,E)$ with edge weights $w : E \to \mathbb{Z}_{\geq 0}$ and edge lengths $l: E \to \mathbb{Z}_{\geq 0}$ along with a root node $r \in V$ and a…
We study the following version of cut sparsification. Given a large edge-weighted network $G$ with $k$ terminal vertices, compress it into a smaller network $H$ with the same terminals, such that every minimum terminal cut in $H$…
We first devise a branching algorithm that computes a minimum independent dominating set on any graph with running time O*(2^0.424n) and polynomial space. This improves the O*(2^0.441n) result by (S. Gaspers and M. Liedloff, A…
In this article, we study the Euclidean minimum spanning tree problem in an imprecise setup. The problem is known as the \emph{Minimum Spanning Tree Problem with Neighborhoods} in the literature. We study the problem where the neighborhoods…
We consider an interval coverage problem. Given $n$ intervals of the same length on a line $L$ and a line segment $B$ on $L$, we want to move the intervals along $L$ such that every point of $B$ is covered by at least one interval and the…
Given a graph, the sparsest cut problem asks for a subset of vertices whose edge expansion (the normalized cut given by the subset) is minimized. In this paper, we study a generalization of this problem seeking for $ k $ disjoint subsets of…
In the laminar-constrained spanning tree problem, the goal is to find a minimum-cost spanning tree which respects upper bounds on the number of times each cut in a given laminar family is crossed. This generalizes the well-studied…
Summary: We present a new method to incrementally construct the FM-index for both short and long sequence reads, up to the size of a genome. It is the first algorithm that can build the index while implicitly sorting the sequences in the…
In this paper, we propose an algebraic approach to upgrade a projective reconstruction to a Euclidean one, and aim at computing the rectifying homography from a minimal number of 9 segments of known length. Constraints are derived from…
Fractional repetition (FR) codes are a class of repair efficient erasure codes that can recover a failed storage node with both optimal repair bandwidth and complexity. In this paper, we study the minimum distance of FR codes, which is the…
In the Hedge Cut problem, the edges of a graph are partitioned into groups called hedges, and the question is what is the minimum number of hedges to delete to disconnect the graph. Ghaffari, Karger, and Panigrahi [SODA 2017] showed that…
In design of instance segmentation networks that reconstruct masks, segmentation is often taken as its literal definition -- assigning each pixel a label. This has led to thinking the problem as a template matching one with the goal of…
Monotonicity is a simple yet significant qualitative characteristic. We consider the problem of segmenting an array in up to K segments. We want segments to be as monotonic as possible and to alternate signs. We propose a quality metric for…
Given two point sets $R$ and $B$ in the plane, with cardinalities $m$ and $n$, respectively, and each set stored in a separate R-tree, we present an algorithm to decide whether $R$ and $B$ are linearly separable. Our algorithm exploits the…
In this paper, we investigate the sample size requirement for exact recovery of a high order tensor of low rank from a subset of its entries. We show that a gradient descent algorithm with initial value obtained from a spectral method can,…
We consider the minimum cut problem in undirected, weighted graphs. We give a simple algorithm to find a minimum cut that $2$-respects (cuts two edges of) a spanning tree $T$ of a graph $G$. This procedure can be used in place of the…
Diameter -- the task of computing the length of a longest shortest path -- is a fundamental graph problem. Assuming the Strong Exponential Time Hypothesis, there is no $O(n^{1.99})$-time algorithm even in sparse graphs [Roditty and…
The minimum cut problem for an undirected edge-weighted graph asks us to divide its set of nodes into two blocks while minimizing the weight sum of the cut edges. Here, we introduce a linear-time algorithm to compute near-minimum cuts. Our…
The run time complexity of state-of-the-art inference algorithms in graph-based dependency parsing is super-linear in the number of input words (n). Recently, pruning algorithms for these models have shown to cut a large portion of the…
The Minimum Fill-in problem is to decide if a graph can be triangulated by adding at most k edges. Kaplan, Shamir, and Tarjan [FOCS 1994] have shown that the problem is solvable in time O(2^(O(k)) + k2 * nm) on graphs with n vertices and m…