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In computational biology, $k$-mers and edit distance are fundamental concepts. However, little is known about the metric space of all $k$-mers equipped with the edit distance. In this work, we explore the structure of the $k$-mer space by…

Data Structures and Algorithms · Computer Science 2023-03-21 Leran Ma , Ke Chen , Mingfu Shao

We study stochastic graph optimization problems in a novel distributed setting. As in the standard centralized setting, a random subgraph $G^*$ of a known base graph $G$ is realized by including each edge $e$ independently with a known…

Data Structures and Algorithms · Computer Science 2026-05-21 Keren Censor-Hillel , Aditi Dudeja , George Giakkoupis

A maximal independent set is an independent set that is not a subset of any other independent set. It is also the key problem of mathematics, computer science, and other fields. A counting problem is a type of computational problem that…

Computational Complexity · Computer Science 2024-09-16 Hao Zhang , Tonghua Su

The maximum independent set problem is a classic optimization problem that has also been studied quite intensively in the distributed setting. While the problem is hard to approximate in general, there are good approximation algorithms…

Data Structures and Algorithms · Computer Science 2025-06-13 Salwa Faour , Fabian Kuhn

The field of dynamic graph algorithms aims at achieving a thorough understanding of real-world networks whose topology evolves with time. Traditionally, the focus has been on the classic sequential, centralized setting where the main…

Data Structures and Algorithms · Computer Science 2021-09-23 Shiri Antaki , Quanquan C. Liu , Shay Solomon

We study the classic subgraph enumeration problem under distributed settings. Existing solutions either suffer from severe memory crisis or rely on large indexes, which makes them impractical for very large graphs. Most of them follow a…

Databases · Computer Science 2019-01-24 Xuguang Ren , Junhu Wang , Wook-Shin Han , Jeffrey Xu Yu

In algorithmic graph theory, a classic open question is to determine the complexity of the Maximum Independent Set problem on $P_t$-free graphs, that is, on graphs not containing any induced path on $t$ vertices. So far, polynomial-time…

Data Structures and Algorithms · Computer Science 2018-04-12 Gábor Bacsó , Daniel Lokshtanov , Dániel Marx , Marcin Pilipczuk , Zsolt Tuza , Erik Jan van Leeuwen

Recently, studying fundamental graph problems in the \emph{Massively Parallel Computation (MPC) framework, inspired by the MapReduce paradigm, has gained a lot of attention. An assumption common to a vast majority of approaches is to allow…

Data Structures and Algorithms · Computer Science 2019-05-28 Sebastian Brandt , Manuela Fischer , Jara Uitto

Hypergraph partitioning is a recurring NP-hard problem in engineering; its efficient solution at scale hinges on parallelism. This work proposes a GPU-centric algorithm for multi-level hypergraph partitioning aimed at a specific set of…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-21 Marco Ronzani , Cristina Silvano

We provide a tight analysis which settles the round complexity of the well-studied parallel randomized greedy MIS algorithm, thus answering the main open question of Blelloch, Fineman, and Shun [SPAA'12]. The parallel/distributed randomized…

Data Structures and Algorithms · Computer Science 2019-05-17 Manuela Fischer , Andreas Noever

We study the Maximum Independent Set (MIS) problem on general graphs within the framework of learning-augmented algorithms. The MIS problem is known to be NP-hard and is also NP-hard to approximate to within a factor of $n^{1-\delta}$ for…

Data Structures and Algorithms · Computer Science 2024-07-17 Vladimir Braverman , Prathamesh Dharangutte , Vihan Shah , Chen Wang

Let H be a graph, and let C_H(G) be the number of (subgraph isomorphic) copies of H contained in a graph G. We investigate the fundamental problem of estimating C_H(G). Previous results cover only a few specific instances of this general…

Data Structures and Algorithms · Computer Science 2019-02-20 Martin Furer , Shiva Prasad Kasiviswanathan

This paper proposes a general system for compute-intensive graph mining tasks that find from a big graph all subgraphs that satisfy certain requirements (e.g., graph matching and community detection). Due to the broad range of applications…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-09-12 Da Yan , Hongzhi Chen , James Cheng , M. Tamer Özsu , Qizhen Zhang , John C. S. Lui

The graph partitioning problem has many applications in scientific computing such as computer aided design, data mining, image compression and other applications with sparse-matrix vector multiplications as a kernel operation. In many cases…

Data Structures and Algorithms · Computer Science 2016-01-08 Foad Lotfifar , Matthew Johnson

The success of modern parallel paradigms such as MapReduce, Hadoop, or Spark, has attracted a significant attention to the Massively Parallel Computation (MPC) model over the past few years, especially on graph problems. In this work, we…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-07 Soheil Behnezhad , Mahsa Derakhshan , MohammadTaghi Hajiaghayi , Richard M. Karp

Subgraph detection has recently been one of the most studied problems in the CONGEST model of distributed computing. In this work, we study the distributed complexity of problems closely related to subgraph detection, mainly focusing on…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-08 Janne H. Korhonen , Amir Nikabadi

Given a set ${\cal R}=\{R_1,R_2,..., R_n\}$ of $n$ randomly positioned axis parallel rectangles in 2D, the problem of computing the minimum clique cover (MCC) and maximum independent set (MIS) for the intersection graph $G({\cal R})$ of the…

Computational Geometry · Computer Science 2012-12-05 Ritankar Mandal , Anirban Ghosh , Sasanka Roy , Subhas C. Nandy

In this paper we give fast distributed graph algorithms for detecting and listing small subgraphs, and for computing or approximating the girth. Our algorithms improve upon the state of the art by polynomial factors, and for girth, we…

Data Structures and Algorithms · Computer Science 2021-01-20 Keren Censor-Hillel , Orr Fischer , Tzlil Gonen , François Le Gall , Dean Leitersdorf , Rotem Oshman

Combinatorial optimization (CO) problems are challenging as the computation time grows exponentially with the input. Graph Neural Networks (GNNs) show promise for researchers in solving CO problems. This study investigates the effectiveness…

Optimization and Control · Mathematics 2024-11-12 Chenchuhui Hu

We study a natural extension of the Maximum Weight Independent Set Problem (MWIS), one of the most studied optimization problems in Graph algorithms. We are given a graph $G=(V,E)$, a weight function $w: V \rightarrow \mathbb{R^+}$, a…

Data Structures and Algorithms · Computer Science 2014-09-30 Sayan Bandyapadhyay