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Graph classification is a significant problem in many scientific domains. It addresses tasks such as the classification of proteins and chemical compounds into categories according to their functions, or chemical and structural properties.…

Machine Learning · Computer Science 2019-02-25 Marcelo Daniel Gutierrez Mallea , Peter Meltzer , Peter J Bentley

Graph-based neural network models are producing strong results in a number of domains, in part because graphs provide flexibility to encode domain knowledge in the form of relational structure (edges) between nodes in the graph. In…

Machine Learning · Computer Science 2020-11-09 Daniel D. Johnson , Hugo Larochelle , Daniel Tarlow

We propose a new framework for the recognition of online handwritten graphics. Three main features of the framework are its ability to treat symbol and structural level information in an integrated way, its flexibility with respect to…

Computer Vision and Pattern Recognition · Computer Science 2017-09-20 Frank Julca-Aguilar , Harold Mouchère , Christian Viard-Gaudin , Nina S. T. Hirata

We present a novel usage of Transformers to make image classification interpretable. Unlike mainstream classifiers that wait until the last fully connected layer to incorporate class information to make predictions, we investigate a…

Many modern data analytics applications on graphs operate on domains where graph topology is not known a priori, and hence its determination becomes part of the problem definition, rather than serving as prior knowledge which aids the…

Information Theory · Computer Science 2020-01-03 Ljubisa Stankovic , Danilo Mandic , Milos Dakovic , Milos Brajovic , Bruno Scalzo , Shengxi Li , Anthony G. Constantinides

Representing graphs by their homomorphism counts has led to the beautiful theory of homomorphism indistinguishability in recent years. Moreover, homomorphism counts have promising applications in database theory and machine learning, where…

Data Structures and Algorithms · Computer Science 2023-10-16 Jan Böker , Louis Härtel , Nina Runde , Tim Seppelt , Christoph Standke

We propose a statistical model for graphs with a core-periphery structure. To do this we define a precise notion of what it means for a graph to have this structure, based on the sparsity properties of the subgraphs of core and periphery…

Methodology · Statistics 2019-10-23 Cian Naik , François Caron , Judith Rousseau

Fractional (hyper-)graph theory is concerned with the specific problems that arise when fractional analogues of otherwise integer-valued (hyper-)graph invariants are considered. The focus of this paper is on fractional edge covers of…

Discrete Mathematics · Computer Science 2023-09-25 Georg Gottlob , Matthias Lanzinger , Reinhard Pichler , Igor Razgon

The main goal of this note is to provide a First-Order Logic with Betweenness (FOLB) axiomatization of the main classes of graphs occurring in Metric Graph Theory, in analogy to Tarski's axiomatization of Euclidean geometry. We provide such…

Combinatorics · Mathematics 2024-07-12 Jérémie Chalopin , Manoj Changat , Victor Chepoi , Jeny Jacob

The definition of $1$-planar graphs naturally extends graph planarity, namely a graph is $1$-planar if it can be drawn in the plane with at most one crossing per edge. Unfortunately, while testing graph planarity is solvable in linear time,…

Computational Geometry · Computer Science 2019-11-05 Carla Binucci , Walter Didimo , Fabrizio Montecchiani

The success of Large Language Models (LLMs) in various domains has led researchers to apply them to graph-related problems by converting graph data into natural language text. However, unlike graph data, natural language inherently has…

Machine Learning · Computer Science 2025-02-13 Xu Chu , Hanlin Xue , Zhijie Tan , Bingce Wang , Tong Mo , Weiping Li

The graph isomorphism problem is a main problem which has numerous applications in different fields. Thus, finding an efficient and easy to implement method to discriminate non-isomorphic graphs is valuable. In this paper, a new method is…

Combinatorics · Mathematics 2016-11-08 Ameneh Farhadian

A variety of machine learning tasks---e.g., matrix factorization, topic modelling, and feature allocation---can be viewed as learning the parameters of a probability distribution over bipartite graphs. Recently, a new class of models for…

Machine Learning · Statistics 2017-12-07 Victor Veitch , Ekansh Sharma , Zacharie Naulet , Daniel M. Roy

We study on which classes of graphs first-order logic (FO) and monadic second-order logic (MSO) have the same expressive power. We show that for all classes C of graphs that are closed under taking subgraphs, FO and MSO have the same…

Logic in Computer Science · Computer Science 2015-03-20 Michael Elberfeld , Martin Grohe , Till Tantau

We propose an approach to learning with graph-structured data in the problem domain of graph classification. In particular, we present a novel type of readout operation to aggregate node features into a graph-level representation. To this…

Machine Learning · Computer Science 2021-05-18 Christoph D. Hofer , Florian Graf , Bastian Rieck , Marc Niethammer , Roland Kwitt

Graph Transformers (GTs) have emerged as powerful architectures for graph-structured data, yet remain constrained by rigid designs and lack quantifiable interpretability. Current state-of-the-art GTs commit to fixed GNN types across all…

Machine Learning · Computer Science 2025-11-03 Shruti Sarika Chakraborty , Peter Minary

The notion of nowhere dense graph classes was introduced by Ne\v{s}et\v{r}il and Ossona de Mendez and provides a robust concept of uniform sparseness of graph classes. Nowhere dense classes generalize many familiar classes of sparse graphs…

Discrete Mathematics · Computer Science 2019-09-17 Sebastian Siebertz

Problems related to finding induced subgraphs satisfying given properties form one of the most studied areas within graph algorithms. Such problems have given rise to breakthrough results and led to development of new techniques both within…

Data Structures and Algorithms · Computer Science 2017-10-31 Petr A. Golovach , Pinar Heggernes , Paloma Lima , Pedro Montealegre

We introduce the computational problem of graphlet transform of a sparse large graph. Graphlets are fundamental topology elements of all graphs/networks. They can be used as coding elements to encode graph-topological information at…

Social and Information Networks · Computer Science 2020-09-02 Dimitris Floros , Nikos Pitsianis , Xiaobai Sun

A dynamic graph algorithm is a data structure that answers queries about a property of the current graph while supporting graph modifications such as edge insertions and deletions. Prior work has shown strong conditional lower bounds for…

Data Structures and Algorithms · Computer Science 2023-01-30 Monika Henzinger , Ami Paz , A. R. Sricharan