Related papers: Cross-lingual Candidate Search for Biomedical Conc…
The ability to match pieces of code to their corresponding natural language descriptions and vice versa is fundamental for natural language search interfaces to software repositories. In this paper, we propose a novel multi-perspective…
The Internet has revolutionized healthcare by offering medical information ubiquitously to patients via web search. The healthcare status, complex medical information needs of patients are expressed diversely and implicitly in their medical…
Background: In the information extraction and natural language processing domain, accessible datasets are crucial to reproduce and compare results. Publicly available implementations and tools can serve as benchmark and facilitate the…
Large Language Models (LLMs) have demonstrated surprising performance across various natural language processing tasks. Recently, medical LLMs enhanced with domain-specific knowledge have exhibited excellent capabilities in medical…
Clinical diagnosis prediction models, when provided with a patient's medical history, aim to detect potential diseases early, facilitating timely intervention and improving prognostic outcomes. However, the inherent scarcity of patient data…
The injection of domain-specific knowledge is crucial for adapting language models (LMs) to specialized fields such as biomedicine. While most current approaches rely on unstructured text corpora, this study explores two complementary…
Knowledge bases (KBs) contain plenty of structured world and commonsense knowledge. As such, they often complement distributional text-based information and facilitate various downstream tasks. Since their manual construction is resource-…
Online medical literature has made health information more available than ever, however, the barrier of complex medical jargon prevents the general public from understanding it. Though parallel and comparable corpora for Biomedical Text…
Medical term normalization consists in mapping a piece of text to a large number of output classes. Given the small size of the annotated datasets and the extremely long tail distribution of the concepts, it is of utmost importance to…
Natural language processing has huge potential in the medical domain which recently led to a lot of research in this field. However, a prerequisite of secure processing of medical documents, e.g., patient notes and clinical trials, is the…
This paper presents a comprehensive evaluation of cost-efficient Large Language Models (LLMs) for diverse biomedical tasks spanning both text and image modalities. We evaluated a range of closed-source and open-source LLMs on tasks such as…
One important challenge in modern Content-Based Medical Image Retrieval (CBMIR) approaches is represented by the semantic gap, related to the complexity of the medical knowledge. Among the methods that are able to close this gap in CBMIR,…
The rapidly increasing volume of electronic health record (EHR) data underscores a pressing need to unlock biomedical knowledge from unstructured clinical texts to support advancements in data-driven clinical systems, including patient…
This article presents a hybrid methodology for building a multilingual corpus designed to support the study of emerging concepts in the humanities and social sciences (HSS), illustrated here through the case of ``non-technological…
Verification of biomedical claims is critical for healthcare decision-making, public health policy and scientific research. We present an interactive biomedical claim verification system by integrating LLMs, transparent model explanations,…
Cross-lingual document search is an information retrieval task in which the queries' language differs from the documents' language. In this paper, we study the instability of neural document search models and propose a novel end-to-end…
The current state of adoption of well-structured electronic health records and integration of digital methods for storing medical patient data in structured formats can often considered as inferior compared to the use of traditional,…
Entities lie in the heart of biomedical natural language understanding, and the biomedical entity linking (EL) task remains challenging due to the fine-grained and diversiform concept names. Generative methods achieve remarkable…
We consider the case of a domain expert who wishes to explore the extent to which a particular idea is expressed in a text collection. We propose the task of semantically matching the idea, expressed as a natural language proposition,…
Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…