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This article introduces the physics of information in the context of molecular biology and genomics. Entropy and information, the two central concepts of Shannon's theory of information and communication, are often confused with each other…

Biomolecules · Quantitative Biology 2007-05-23 Christoph Adami

A cornerstone of our understanding of both biological and artificial neural networks is that they store information in the strengths of synaptic connections among the neurons. However, in contrast to the well-established theory for…

Neurons and Cognition · Quantitative Biology 2026-04-29 Xinhao Fan , Shreesh P Mysore

Semantic communication systems often use an end-to-end neural network to map input data into continuous symbols. These symbols, which are essentially neural network features, usually have fixed dimensions and heavy-tailed distributions.…

Information Theory · Computer Science 2025-12-17 Hanju Yoo , Dongha Choi , Songkuk Kim , Chan-Byoung Chae , Robert W. Heath

How the human brain processes information during different cognitive tasks is one of the greatest questions in contemporary neuroscience. Understanding the statistical properties of brain signals during specific activities is one promising…

Recently, a series of studies have tried to extract interactions between input variables modeled by a DNN and define such interactions as concepts encoded by the DNN. However, strictly speaking, there still lacks a solid guarantee whether…

Machine Learning · Computer Science 2024-09-16 Mingjie Li , Quanshi Zhang

We propose a new framework for reasoning about information in complex systems. Our foundation is based on a variational extension of Shannon's information theory that takes into account the modeling power and computational constraints of…

Machine Learning · Computer Science 2020-02-26 Yilun Xu , Shengjia Zhao , Jiaming Song , Russell Stewart , Stefano Ermon

Brain decoding involves the determination of a subject's cognitive state or an associated stimulus from functional neuroimaging data measuring brain activity. In this setting the cognitive state is typically characterized by an element of a…

Machine Learning · Statistics 2015-04-14 Nicole Croteau , Farouk S. Nathoo , Jiguo Cao , Ryan Budney

To maintain coherence in language, the brain must satisfy key competing temporal demands: the gradual accumulation of meaning across extended context (drift) and the rapid reconfiguration of representations at event boundaries (shift). How…

An outstanding problem in neuroscience is to understand how information is integrated across the many modules of the brain. While classic information-theoretic measures have transformed our understanding of feedforward information…

Neurons and Cognition · Quantitative Biology 2019-02-12 Daniel Toker , Friedrich T. Sommer

How much information do large brain networks integrate as a whole over the sum of their parts? Can the dynamical complexity of such networks be globally quantified in an information-theoretic way and be meaningfully coupled to brain…

Neurons and Cognition · Quantitative Biology 2016-12-22 Xerxes D. Arsiwalla , Paul Verschure

We develop a mathematical model of information transmission across the biological neural network of the human brain. The overall function of the brain consists of the emergent processes resulting from the spread of information through the…

Biological Physics · Physics 2018-01-22 Stefanie Heyden , Michael Ortiz

It has been observed that neural networks perform poorly when the data or tasks are presented sequentially. Unlike humans, neural networks suffer greatly from catastrophic forgetting, making it impossible to perform life-long learning. To…

Machine Learning · Computer Science 2023-01-31 Longhui Yu , Tianyang Hu , Lanqing Hong , Zhen Liu , Adrian Weller , Weiyang Liu

Interpreting human neural signals to decode static speech intentions such as text or images and dynamic speech intentions such as audio or video is showing great potential as an innovative communication tool. Human communication accompanies…

Artificial Intelligence · Computer Science 2025-01-22 Ji-Ha Park , Seo-Hyun Lee , Soowon Kim , Seong-Whan Lee

Brains learn to represent information from a large set of stimuli, typically by weak supervision. Unsupervised learning is therefore a natural approach for exploring the design of biological neural networks and their computations.…

Neurons and Cognition · Quantitative Biology 2025-10-17 Roy Urbach , Elad Schneidman

We consider the implications of the mathematical analysis of neurone-to-neurone dynamical complex networks. We show how the dynamical behaviour of small scale strongly connected networks lead naturally to non-binary information processing…

Neurons and Cognition · Quantitative Biology 2016-09-15 Peter Grindrod

The informational synthesis of neural structures, processes, parameters and characteristics that allow a unified description and modeling as neural machines of natural and artificial neural systems is presented. The general informational…

Neural and Evolutionary Computing · Computer Science 2024-04-08 Iosif Iulian Petrila

In this paper, we propose the Neural Knowledge DNA, a framework that tailors the ideas underlying the success of neural networks to the scope of knowledge representation. Knowledge representation is a fundamental field that dedicate to…

Artificial Intelligence · Computer Science 2016-03-01 Haoxi Zhang , Cesar Sanin , Edward Szczerbicki

Any physical process can be represented as a quantum channel mapping an initial state to a final state. Hence it can be characterized from the point of view of communication theory, i.e., in terms of its ability to transfer information.…

Quantum Physics · Physics 2014-12-16 F. Caruso , V. Giovannetti , C. Lupo , S. Mancini

Distributed computing models typically assume reliable communication between processors. While such assumptions often hold for engineered networks, e.g., due to underlying error correction protocols, their relevance to biological systems,…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-06-29 Ofer Feinerman , Bernhard Haeupler , Amos Korman

Many recent studies have shown that the perception of speech can be decoded from brain signals and subsequently reconstructed as continuous language. However, there is a lack of neurological basis for how the semantic information embedded…

Computation and Language · Computer Science 2026-04-14 Congchi Yin , Ziyi Ye , Piji Li