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While interests in tabular deep learning has significantly grown, conventional tree-based models still outperform deep learning methods. To narrow this performance gap, we explore the innovative retrieval mechanism, a methodology that…

Machine Learning · Computer Science 2023-11-14 Felix den Breejen , Sangmin Bae , Stephen Cha , Tae-Young Kim , Seoung Hyun Koh , Se-Young Yun

Summary: GeneFEAST, implemented in Python, is a gene-centric functional enrichment analysis summarisation and visualisation tool that can be applied to large functional enrichment analysis (FEA) results arising from upstream FEA pipelines.…

Quantitative Methods · Quantitative Biology 2025-03-07 Avigail Taylor , Valentine M Macaulay , Anand K Maurya , Matthieu J Miossec , Francesca M Buffa

Process mining techniques including process discovery, conformance checking, and process enhancement provide extensive knowledge about processes. Discovering running processes and deviations as well as detecting performance problems and…

Other Computer Science · Computer Science 2021-08-05 Mahsa Pourbafrani , Shuai Jiao , Wil M. P. van der Aalst

Evaluating retrieval-augmented generation (RAG) presents challenges, particularly for retrieval models within these systems. Traditional end-to-end evaluation methods are computationally expensive. Furthermore, evaluation of the retrieval…

Computation and Language · Computer Science 2024-04-23 Alireza Salemi , Hamed Zamani

The vertex-centric programming model, designed to improve the programmability in graph processing application writing, has attracted great attention over the years. However, shared memory frameworks that implement the vertex-centric…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-20 Ludovic A. R. Capelli , Zhenjiang Hu , Timothy A. K. Zakian , Nick Brown , J. Mark Bull

Recent advances in Machine Learning (ML) have produced models that extract structured information from complex data. However, a significant challenge lies in translating these perceptual or extractive outputs into actionable and explainable…

Machine Learning · Computer Science 2026-01-08 Dyuman Aditya , Colton Payne , Mario Leiva , Paulo Shakarian

SPEEDY is an Eclipse-based IDE for exploring techniques that assist users in generating correct specifications, particularly including invariant inference algorithms and tools. It integrates with several back-end tools that propose…

Logic in Computer Science · Computer Science 2014-04-29 David R. Cok , Scott C. Johnson

This paper describes Brown University's submission to the TREC 2019 Deep Learning track. We followed a 2-phase method for producing a ranking of passages for a given input query: In the the first phase, the user's query is expanded by…

Information Retrieval · Computer Science 2020-09-10 George Zerveas , Ruochen Zhang , Leila Kim , Carsten Eickhoff

We present \code{phaser}, an open-source Python package that provides a unified interface to both conventional and gradient descent-based ptychographic algorithms. Features such as mixed-state probe, probe position correction, and…

Computational Physics · Physics 2025-07-21 Colin Gilgenbach , Menglin Zhu , James M. LeBeau

On-screen keyboard eye-typing systems are limited due to the lack of predictive text and user-centred approaches, resulting in low text entry rates and frequent recalibration. This work proposes integrating the prediction by partial…

Human-Computer Interaction · Computer Science 2024-10-14 Hrushikesh Etikikota , Yogesh Kumar Meena

Within the last years, Python became more prominent in the scientific community and is now used for simulations, machine learning, and data analysis. All these tasks profit from additional compute power offered by parallelism and…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-10-26 Andreas Gocht , Robert Schöne , Jan Frenzel

The Fenwick tree is a classical implicit data structure that stores an array in such a way that modifying an element, accessing an element, computing a prefix sum and performing a predecessor search on prefix sums all take logarithmic time.…

Data Structures and Algorithms · Computer Science 2019-10-15 Stefano Marchini , Sebastiano Vigna

In this paper, we present pyspect, a Python toolbox that simplifies the use of reachability analysis for temporal logic problems. Currently, satisfying complex requirements in cyber-physical systems requires significant manual effort and…

Systems and Control · Electrical Eng. & Systems 2025-10-14 Kaj Munhoz Arfvidsson , Loizos Hadjiloizou , Frank J. Jiang , Karl H. Johansson , Jonas Mårtensson

Software developers use Application Programming Interfaces (APIs) of libraries and frameworks extensively while writing programs. In this context, the recommendations provided in code completion pop-ups help developers choose the desired…

Software Engineering · Computer Science 2016-09-01 Andrea Renika D'Souza , Di Yang , Cristina V. Lopes

Rich entity representations are useful for a wide class of problems involving entities. Despite their importance, there is no standardized benchmark that evaluates the overall quality of entity representations. In this work, we propose…

Computation and Language · Computer Science 2019-11-12 Mingda Chen , Zewei Chu , Yang Chen , Karl Stratos , Kevin Gimpel

Recommendation system plays an important role in online web applications. Sequential recommender further models user short-term preference through exploiting information from latest user-item interaction history. Most of the sequential…

Information Retrieval · Computer Science 2020-09-14 Ye Tao , Can Wang , Lina Yao , Weimin Li , Yonghong Yu

Medical applications challenge today's text categorization techniques by demanding both high accuracy and ease-of-interpretation. Although deep learning has provided a leap ahead in accuracy, this leap comes at the sacrifice of…

LiteEFG is an efficient library with easy-to-use Python bindings, which can solve multiplayer extensive-form games (EFGs). LiteEFG enables the user to express computation graphs in Python to define updates on the game tree structure. The…

Computer Science and Game Theory · Computer Science 2024-07-31 Mingyang Liu , Gabriele Farina , Asuman Ozdaglar

We design, implement, and evaluate DeepEverest, a system for the efficient execution of interpretation by example queries over the activation values of a deep neural network. DeepEverest consists of an efficient indexing technique and a…

Databases · Computer Science 2023-04-04 Dong He , Maureen Daum , Walter Cai , Magdalena Balazinska

How to predict precise user preference and how to make efficient retrieval from a big corpus are two major challenges of large-scale industrial recommender systems. In tree-based methods, a tree structure T is adopted as index and each item…

Information Retrieval · Computer Science 2021-09-23 Daqing Chang , Jintao Liu , Ziru Xu , Han Li , Han Zhu , Xiaoqiang Zhu