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Modeling membrane interactions with arbitrarily shaped colloidal particles, such as environmental micro- and nanoplastics, at the cell scale remains particularly challenging, owing to the complexity of particle geometries and the need to…
This work addresses model order reduction for complex moving fronts, which are transported by advection or through a reaction-diffusion process. Such systems are especially challenging for model order reduction since the transport cannot be…
This paper presents a general and robust method for the fluid-structure interaction of membranes and shells undergoing large displacement and large added-mass effects by coupling an immersed-boundary method with a shell finite-element…
We use Langevin dynamics simulations to study the mass diffusion problem across two adjacent porous layers of different transport property. At the interface between the layers, we impose the Kedem-Katchalsky (KK) interfacial boundary…
We present a novel approach for simulating acoustic (pressure) wave propagation across different media separated by a diffuse interface through the use of a weak compressibility formulation. Our method builds on our previous work on an…
We present a novel (high-order) hybridizable discontinuous Galerkin (HDG) scheme for the fluid-structure interaction (FSI) problem. The (moving domain) incompressible Navier-Stokes equations are discretized using a divergence-free HDG…
Mathematical models describing the spatial spreading and invasion of populations of biological cells are often developed in a continuum modelling framework using reaction-diffusion equations. While continuum models based on linear diffusion…
We solve the convection-diffusion equation using a coupling of cell-centered finite volume (FV) and discontinuous Galerkin (DG) methods. The domain is divided into disjoint regions assigned to FV or DG, and the two methods are coupled…
We propose a mesh adaptation procedure for Cartesian quadtree meshes, to discretize scalar advection-diffusion-reaction problems. The adaptation process is driven by a recovery-based a posteriori estimator for the $L^2(\Omega)$-norm of the…
A dispersive wave hydro-sediment-morphodynamic model developed by complementing the shallow water hydro-sediment-morphodynamic (SHSM) equations with the dispersive term from the Green-Naghdi equations is presented. A numerical solution…
This chapter reviews and compares discontinuous Galerkin time-stepping methods for the numerical approximation of second-order ordinary differential equations, particularly those stemming from space finite element discretization of wave…
We present a model treating the kinetics of adsorption of soluble surface-active molecules at the interface between an aqueous solution and another fluid phase. The model accounts for both the diffusive transport inside the solution and the…
Microscopic processes on surfaces such as adsorption, desorption, diffusion and reaction of interacting particles can be simulated using kinetic Monte Carlo (kMC) algorithms. Even though kMC methods are accurate, they are computationally…
We couple the L1 discretization for Caputo derivative in time with spectral Galerkin method in space to devise a scheme that solves quasilinear subdiffusion equations. Both the diffusivity and the source are allowed to be nonlinear…
This paper focuses on the design, analysis and implementation of a new preconditioning concept for linear second order partial differential equations, including the convection-diffusion-reaction problems discretized by Galerkin or…
This paper addresses the problem of friction-free contact between two elastic bodies. We develop an augmented Lagrangian method that provides computational convenience by reformulating the contact problem as a nonlinear variational…
We formulate and analyze interior penalty discontinuous Galerkin methods for coupled elliptic PDEs modeling excitable tissue, represented by intracellular and extracellular domains sharing a common interface. The PDEs are coupled through a…
We deal with non-hydrostatic mesoscale atmospheric modeling using the fully implicit space-time discontinuous Galerkin method in combination with the anisotropic $hp$-mesh adaptation technique. The time discontinuous approximation allows…
We present recent finite element numerical results on a model convection-diffusion problem in the singular perturbed case when the convection term dominates the problem. We compare the standard Galerkin discretization using the linear…
One of the main challenges in diffusion-based molecular communication is dealing with the non-linearity of reaction-diffusion chemical equations. While numerical methods can be used to solve these equations, a change in the input signals or…