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The NP-hard Odd Cycle Transversal problem asks for a minimum vertex set whose removal from an undirected input graph $G$ breaks all odd cycles, and thereby yields a bipartite graph. The problem is well-known to be fixed-parameter tractable…

Data Structures and Algorithms · Computer Science 2024-10-08 Bart M. P. Jansen , Yosuke Mizutani , Blair D. Sullivan , Ruben F. A. Verhaegh

Sparse, irregular graphs show up in various applications like linear algebra, machine learning, engineering simulations, robotic control, etc. These graphs have a high degree of parallelism, but their execution on parallel threads of modern…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-02-17 Nimish Shah , Wannes Meert , Marian Verhelst

In a disk graph, every vertex corresponds to a disk in $\mathbb{R}^2$ and two vertices are connected by an edge whenever the two corresponding disks intersect. Disk graphs form an important class of geometric intersection graphs, which…

Data Structures and Algorithms · Computer Science 2024-07-15 Daniel Lokshtanov , Fahad Panolan , Saket Saurabh , Jie Xue , Meirav Zehavi

We initiate the study of the Bipartite Contraction problem from the perspective of parameterized complexity. In this problem we are given a graph $G$ and an integer $k$, and the task is to determine whether we can obtain a bipartite graph…

Data Structures and Algorithms · Computer Science 2011-03-08 Pinar Heggernes , Pim van 't Hof , Daniel Lokshtanov , Christophe Paul

The vertex cover problem is a fundamental and widely studied combinatorial optimization problem. It is known that its standard linear programming relaxation is integral for bipartite graphs and half-integral for general graphs. As a…

Data Structures and Algorithms · Computer Science 2023-07-28 Danish Kashaev , Guido Schäfer

The One Sided Crossing Minimization (OSCM) problem is an optimization problem in graph drawing that aims to minimize the number of edge crossings in bipartite graph layouts. It has practical applications in areas such as network…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-30 Bogdan-Ioan Popa , Adrian-Marius Dumitran , Livia Magureanu

The bipartite graph structure has shown its promising ability in facilitating the subspace clustering and spectral clustering algorithms for large-scale datasets. To avoid the post-processing via k-means during the bipartite graph…

Machine Learning · Computer Science 2023-05-15 Si-Guo Fang , Dong Huang , Chang-Dong Wang , Jian-Huang Lai

Graph partitioning is a key fundamental problem in the area of big graph computation. Previous works do not consider the practical requirements when optimizing the big data analysis in real applications. In this paper, motivated by…

Databases · Computer Science 2024-04-10 Baoling Ning , Jianzhong Li

Many graph problems can be solved using ordered parallel graph algorithms that achieve significant speedup over their unordered counterparts by reducing redundant work. This paper introduces a new priority-based extension to GraphIt, a…

Programming Languages · Computer Science 2020-01-28 Yunming Zhang , Ajay Brahmakshatriya , Xinyi Chen , Laxman Dhulipala , Shoaib Kamil , Saman Amarasinghe , Julian Shun

We study the problem of transforming bipartite graphs into bicluster graphs. Abu-Khzam, Isenmann, and Merchad [IWOCA '25] introduced two variants of this problem. In both problems, the goal is to transform a bipartite graph into a bicluster…

Data Structures and Algorithms · Computer Science 2025-12-02 Matthias Bentert , Pål Grønås Drange , Erlend Haugen

The graph partitioning problem has many applications in scientific computing such as computer aided design, data mining, image compression and other applications with sparse-matrix vector multiplications as a kernel operation. In many cases…

Data Structures and Algorithms · Computer Science 2016-01-08 Foad Lotfifar , Matthew Johnson

The graph partitioning problem is a well-known NP-hard problem. In this paper, we formulate a 0-1 quadratic integer programming model for the graph partitioning problem with vertex weight constraints and fixed vertex constraints, and…

Optimization and Control · Mathematics 2025-03-17 Wumwi Sun , Hongwei Liu , Xiaoyu Wang

We give a combinatorial condition for the existence of efficient, LP-based FPT algorithms for a broad class of graph-theoretical optimisation problems. Our condition is based on the notion of biased graphs known from matroid theory.…

Data Structures and Algorithms · Computer Science 2020-02-21 Euiwoong Lee , Magnus Wahlström

The rapidly growing number of large network analysis problems has led to the emergence of many parallel and distributed graph processing systems---one survey in 2014 identified over 80. Since then, the landscape has evolved; some packages…

Performance · Computer Science 2017-05-18 Samuel Pollard , Boyana Norris

Graphs are widely used to model execution dependencies in applications. In particular, the NP-complete problem of partitioning a graph under constraints receives enormous attention by researchers because of its applicability in…

Data Structures and Algorithms · Computer Science 2017-04-04 Orlando Moreira , Merten Popp , Christian Schulz

Many common graph data mining tasks take the form of identifying dense subgraphs (e.g. clustering, clique-finding, etc). In biological applications, the natural model for these dense substructures is often a complete bipartite graph…

Data Structures and Algorithms · Computer Science 2019-01-28 Kyle Kloster , Blair D. Sullivan , Andrew van der Poel

Partitioning a graph into blocks of "roughly equal" weight while cutting only few edges is a fundamental problem in computer science with a wide range of applications. In particular, the problem is a building block in applications that…

Data Structures and Algorithms · Computer Science 2021-05-06 Lars Gottesbüren , Tobias Heuer , Peter Sanders , Christian Schulz , Daniel Seemaier

The benefits of a recently proposed method to approximate hard optimization problems are demonstrated on the graph partitioning problem. The performance of this new method, called Extremal Optimization, is compared to Simulated Annealing in…

Statistical Mechanics · Physics 2009-10-31 S. Boettcher

The vast amounts of data used in social, business or traffic networks, biology and other natural sciences are often managed in graph-based data sets, consisting of a few thousand up to billions and trillions of vertices and edges,…

Databases · Computer Science 2021-10-22 Matthias Hauck , Ismail Oukid , Holger Fröning

We study a graph partitioning problem motivated by the simulation of the physical movement of multi-body systems on an atomistic level, where the forces are calculated from a quantum mechanical description of the electrons. Several advanced…

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