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Recently, several methods have leveraged deep generative modeling to produce example-based explanations of image classifiers. Despite producing visually stunning results, these methods are largely disconnected from classical explainability…

Machine Learning · Computer Science 2025-09-11 Philipp Vaeth , Alexander M. Fruehwald , Benjamin Paassen , Magda Gregorova

This paper presents a scalable method for integrating compositional morphological representations into a vector-based probabilistic language model. Our approach is evaluated in the context of log-bilinear language models, rendered suitably…

Computation and Language · Computer Science 2014-05-19 Jan A. Botha , Phil Blunsom

A main challenge of data-driven sciences is how to make maximal use of the progressively expanding databases of experimental datasets in order to keep research cumulative. We introduce the idea of a modeling-based dataset retrieval engine…

Quantitative Methods · Quantitative Biology 2015-06-19 Ali Faisal , Jaakko Peltonen , Elisabeth Georgii , Johan Rung , Samuel Kaski

The Unified Modelling Language is emerging as a de-facto standard for modelling object-oriented systems. However, the semantics document that a part of the standard definition primarily provides a description of the language's syntax and…

Software Engineering · Computer Science 2014-09-25 Andy Evans , Kevin Lano , Robert France , Bernhard Rumpe

Model transformation tools assist system designers by reducing the labor--intensive task of creating and updating models of various aspects of systems, ensuring that modeling assumptions remain consistent across every model of a system, and…

Systems and Control · Computer Science 2019-07-02 Natasha Jarus , Sahra Sedigh Sarvestani , Ali Hurson

This paper is a first step to chase the ambitious objective of developing a mathmatical theory of living systems. The contents refer modeling large systems of interacting living entities with the aim of describing their collective behaviors…

Efficiently navigating complex environments requires agents to internalize the underlying logic of their world, yet standard world modelling methods often struggle with sample inefficiency, lack of transparency, and poor scalability. We…

Artificial Intelligence · Computer Science 2026-02-20 Enrique Crespo-Fernandez , Oliver Ray , Telmo de Menezes e Silva Filho , Peter Flach

Large scale dynamical systems (e.g. many nonlinear coupled differential equations) can often be summarized in terms of only a few state variables (a few equations), a trait that reduces complexity and facilitates exploration of behavioral…

The applicability of computational and dynamical systems models to organisms is scrutinized, using examples from developmental biology and cognition. Developmental morphogenesis is dependent on the inherent material properties of developing…

Neurons and Cognition · Quantitative Biology 2023-10-24 Stuart A. Newman

We present a computational model for the semantic interpretation of symmetry in naturalistic scenes. Key features include a human-centred representation, and a declarative, explainable interpretation model supporting deep semantic…

Computer Vision and Pattern Recognition · Computer Science 2018-09-17 Jakob Suchan , Mehul Bhatt , Srikrishna Vardarajan , Seyed Ali Amirshahi , Stella Yu

This essay advocates the view that any problem that has a meaningful empirical content, can be formulated in constructive, more definitely, finite terms. We consider combinatorial models of dynamical systems and approaches to statistical…

Quantum Physics · Physics 2015-07-21 Vladimir V. Kornyak

Motivated by algorithmic information theory, the problem of program discovery can help find candidates of underlying generative mechanisms of natural and artificial phenomena. The uncomputability of such inverse problem, however,…

Information Theory · Computer Science 2021-12-29 Vladimir Lemusa , Eduardo Acuña , Víctor Zamora , Francisco Hernandez-Quiroz , Hector Zenil

Symbolic regression is the task of identifying a mathematical expression that best fits a provided dataset of input and output values. Due to the richness of the space of mathematical expressions, symbolic regression is generally a…

Machine Learning · Computer Science 2021-06-29 Mojtaba Valipour , Bowen You , Maysum Panju , Ali Ghodsi

Mathematical modelling and numerical simulations of interaction populations are crucial topics in systems biology. The interactions of ecological models may occur among individuals of the same species or individuals of different species.…

Quantitative Methods · Quantitative Biology 2017-09-04 Sarbaz H. A. Khoshnaw

Model-driven engineering is the automatic production of software artefacts from abstract models of structure and functionality. By targeting a specific class of system, it is possible to automate aspects of the development process, using…

Software Engineering · Computer Science 2013-01-03 Chen-Wei Wang , Jim Davies

We propose a static and a dynamic approach to model biological signaling networks, and show how each can be used to answer relevant biological questions. For this we use the two different mathematical tools of Propositional Logic and…

Quantitative Methods · Quantitative Biology 2009-05-13 Utz-Uwe Haus , Kathrin Niermann , Klaus Truemper , Robert Weismantel

Modeling has become a widespread, useful tool in mathematics applied to diverse fields, from physics to economics to biomedicine. Practitioners of modeling may use algebraic or differential equations, to the elements of which they attribute…

Other Statistics · Statistics 2025-11-07 Andrea De Gaetano

Basic principles of mathematical modeling are reviewed in this book, with the focus on physics and its practical applications, and examples of selected mathematical methods are presented. Most of the models have been imported from physics…

Classical Physics · Physics 2025-07-14 Sergej Pankratow

Symbolic regression is emerging as a promising machine learning method for learning succinct underlying interpretable mathematical expressions directly from data. Whereas it has been traditionally tackled with genetic programming, it has…

Machine Learning · Computer Science 2025-01-14 Nour Makke , Sanjay Chawla

Given a natural language instruction and an input scene, our goal is to train a model to output a manipulation program that can be executed by the robot. Prior approaches for this task possess one of the following limitations: (i) rely on…