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Identifying governing equations for a dynamical system is a topic of critical interest across an array of disciplines, from mathematics to engineering to biology. Machine learning -- specifically deep learning -- techniques have shown their…

Dynamical Systems · Mathematics 2026-05-07 Nibodh Boddupalli , Timothy Matchen , Jeff Moehlis

The use of Domain-Specific Languages (DSLs) is a promising field for the development of tools tailored to specific problem spaces, effectively diminishing the complexity of hand-made software. With the goal of making models as precise,…

Software Engineering · Computer Science 2019-01-18 Fernando Macías , Uwe Wolter , Adrian Rutle , Francisco Durán , Roberto Rodriguez-Echeverria

Mathematical modelling has a long history in the context of collective cell migration, with applications throughout development, disease and regenerative medicine. The aim of modelling in this context is to provide a framework in which to…

Quantitative Methods · Quantitative Biology 2025-06-24 Ruth E. Baker , Rebecca M. Crossley , Carles Falco , Simon F. Martina-Perez

The area of declarative data analytics explores the application of the declarative paradigm on data science and machine learning. It proposes declarative languages for expressing data analysis tasks and develops systems which optimize…

Databases · Computer Science 2019-02-05 Nantia Makrynioti , Vasilis Vassalos

Mathematical modelling allows us to concisely describe fundamental principles in biology. Analysis of models can help to both explain known phenomena, and predict the existence of new, unseen behaviours. Model analysis is often a complex…

Quantitative Methods · Quantitative Biology 2020-08-13 Mark Blyth , Ludovic Renson , Lucia Marucci

The mathematical representation of semantics is a key issue for Natural Language Processing (NLP). A lot of research has been devoted to finding ways of representing the semantics of individual words in vector spaces. Distributional…

Computation and Language · Computer Science 2014-11-13 Karl Moritz Hermann

We advocate the use of qualitative models in the analysis of large biological systems. We show how qualitative models are linked to theoretical differential models and practical graphical models of biological networks. A new technique for…

Molecular Networks · Quantitative Biology 2007-05-23 Philippe Veber , Michel Le_Borgne , Anne Siegel , Sandrine Lagarrigue , Ovidiu Radulescu

Process modeling is usually done using imperative modeling languages like BPMN or EPCs. In order to cope with the complexity of human-centric and flexible business processes several declarative process modeling languages (DPMLs) have been…

Software Engineering · Computer Science 2016-03-22 Lars Ackermann , Stefan Schönig , Stefan Jablonski

Symbolic regression is a powerful system identification technique in industrial scenarios where no prior knowledge on model structure is available. Such scenarios often require specific model properties such as interpretability, robustness,…

Model selection methods are used in different scientific contexts to represent a characteristic data set in terms of a reduced number of parameters. Apparently, these methods have not found their way into the literature on multibody systems…

Robotics · Computer Science 2017-05-30 Javier Ros , Xabier Iriarte , Aitor Plaza , Vicente Mata

In the Declarative Networking paradigm, Datalog-like languages are used to express distributed computations. Whereas recently formal operational semantics for these languages have been developed, a corresponding declarative semantics has…

Logic in Computer Science · Computer Science 2020-02-19 Tom J. Ameloot , Jan Van den Bussche , William R. Marczak , Peter Alvaro , Joseph M. Hellerstein

Distributed representations of words have been shown to capture lexical semantics, as demonstrated by their effectiveness in word similarity and analogical relation tasks. But, these tasks only evaluate lexical semantics indirectly. In this…

Computation and Language · Computer Science 2016-12-02 Thanapon Noraset , Chen Liang , Larry Birnbaum , Doug Downey

Causal representation learning promises to extend causal models to hidden causal variables from raw entangled measurements. However, most progress has focused on proving identifiability results in different settings, and we are not aware of…

Machine Learning · Computer Science 2025-02-04 Dingling Yao , Caroline Muller , Francesco Locatello

Simulation models are an absolute necessity in the human and social sciences, which can only very exceptionally use experimental science methods to construct their knowledge. Models enable the simulation of social processes by replacing the…

Computers and Society · Computer Science 2020-01-06 J. Raimbault , D. Pumain

Classical models of computation have been successful in capturing the very essence of individual computing devices. Although they are useful to understand computability power and limitations in the small, such models are not suitable to…

Logic in Computer Science · Computer Science 2025-08-26 Damian Arellanes

Computational simulations are a popular method for testing hypotheses about the emergence of communication. This kind of research is performed in a variety of traditions including language evolution, developmental psychology, cognitive…

Artificial Intelligence · Computer Science 2023-03-09 Julian Zubek , Tomasz Korbak , Joanna Rączaszek-Leonardi

Hierarchy has widely been recognized as a viable approach to deal with the complexity of conceptual models. For instance, in declarative business process models, hierarchy is realized by sub-processes. While technical implementations of…

Software Engineering · Computer Science 2015-11-13 Stefan Zugal , Pnina Soffer , Jakob Pinggera , Barbara Weber

Understanding the mechanisms of interactions within cells, tissues, and organisms is crucial to driving developments across biology and medicine. Mathematical modeling is an essential tool for simulating biological systems and revealing…

Molecular Networks · Quantitative Biology 2024-08-13 Lingxia Qiao , Ali Khalilimeybodi , Nathaniel J Linden-Santangeli , Padmini Rangamani

Data-driven approaches are becoming more common as problem-solving techniques in many areas of research and industry. In most cases, machine learning models are the key component of these solutions, but a solution involves multiple such…

Artificial Intelligence · Computer Science 2019-06-20 Parisa Kordjamshidi , Dan Roth , Kristian Kersting

Models of complicated systems can be represented in different ways - in scientific papers, they are represented using natural language text as well as equations. But to be of real use, they must also be implemented as software, thus making…