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Deep learning has achieved tremendous success in designing novel chemical compounds with desirable pharmaceutical properties. In this work, we focus on a new type of drug design problem -- generating a small "linker" to physically attach…

Machine Learning · Computer Science 2022-05-17 Yinan Huang , Xingang Peng , Jianzhu Ma , Muhan Zhang

Prediction of protein-ligand interactions (PLI) plays a crucial role in drug discovery as it guides the identification and optimization of molecules that effectively bind to target proteins. Despite remarkable advances in deep…

Biomolecules · Quantitative Biology 2023-07-18 Seokhyun Moon , Sang-Yeon Hwang , Jaechang Lim , Woo Youn Kim

Protein (receptor)--ligand interaction prediction is a critical component in computer-aided drug design, significantly influencing molecular docking and virtual screening processes. Despite the development of numerous scoring functions in…

Biomolecules · Quantitative Biology 2024-01-22 Haoyu Lin , Shiwei Wang , Jintao Zhu , Yibo Li , Jianfeng Pei , Luhua Lai

Current approaches for deformable medical image registration often struggle to fulfill all of the following criteria: versatile applicability, small computation or training times, and the being able to estimate large deformations.…

Image and Video Processing · Electrical Eng. & Systems 2021-12-07 Hanna Siebert , Lasse Hansen , Mattias P. Heinrich

Detecting objects and estimating their pose remains as one of the major challenges of the computer vision research community. There exists a compromise between localizing the objects and estimating their viewpoints. The detector ideally…

Computer Vision and Pattern Recognition · Computer Science 2018-10-08 Daniel Oñoro-Rubio , Roberto J. López-Sastre , Carolina Redondo-Cabrera , Pedro Gil-Jiménez

The recent interest in using deep learning for seismic interpretation tasks, such as facies classification, has been facing a significant obstacle, namely the absence of large publicly available annotated datasets for training and testing…

Image and Video Processing · Electrical Eng. & Systems 2019-04-11 Yazeed Alaudah , Patrycja Michalowicz , Motaz Alfarraj , Ghassan AlRegib

Estimating the 6-DoF pose of a rigid object from a single RGB image is a crucial yet challenging task. Recent studies have shown the great potential of dense correspondence-based solutions, yet improvements are still needed to reach…

Computer Vision and Pattern Recognition · Computer Science 2023-08-15 Ruyi Lian , Haibin Ling

We present a deep learning framework for computer-aided lung cancer diagnosis. Our multi-stage framework detects nodules in 3D lung CAT scans, determines if each nodule is malignant, and finally assigns a cancer probability based on these…

Computer Vision and Pattern Recognition · Computer Science 2017-05-29 Kingsley Kuan , Mathieu Ravaut , Gaurav Manek , Huiling Chen , Jie Lin , Babar Nazir , Cen Chen , Tse Chiang Howe , Zeng Zeng , Vijay Chandrasekhar

3D human pose and shape estimation (a.k.a. "human mesh recovery") has achieved substantial progress. Researchers mainly focus on the development of novel algorithms, while less attention has been paid to other critical factors involved.…

Computer Vision and Pattern Recognition · Computer Science 2022-09-22 Hui En Pang , Zhongang Cai , Lei Yang , Tianwei Zhang , Ziwei Liu

This paper proposes the first self-supervised 6D object pose prediction from multimodal RGB+polarimetric images. The novel training paradigm comprises 1) a physical model to extract geometric information of polarized light, 2) a…

Computer Vision and Pattern Recognition · Computer Science 2023-12-05 Patrick Ruhkamp , Daoyi Gao , Nassir Navab , Benjamin Busam

The Deep Learning Visual Space Simulation System (DLVS3) introduces a novel synthetic dataset generator and a simulation pipeline specifically designed for training and testing satellite pose estimation solutions. This work introduces the…

Computer Vision and Pattern Recognition · Computer Science 2025-06-17 Szabolcs Velkei , Csaba Goldschmidt , Károly Vass

3D human pose estimation and mesh recovery have attracted widespread research interest in many areas, such as computer vision, autonomous driving, and robotics. Deep learning on 3D human pose estimation and mesh recovery has recently…

Computer Vision and Pattern Recognition · Computer Science 2024-07-04 Yang Liu , Changzhen Qiu , Zhiyong Zhang

A central problem in computational biophysics is protein structure prediction, i.e., finding the optimal folding of a given amino acid sequence. This problem has been studied in a classical abstract model, the HP model, where the protein is…

Machine Learning · Computer Science 2023-03-14 Kaiyuan Yang , Houjing Huang , Olafs Vandans , Adithya Murali , Fujia Tian , Roland H. C. Yap , Liang Dai

Many robot manipulation tasks can be framed as geometric reasoning tasks, where an agent must be able to precisely manipulate an object into a position that satisfies the task from a set of initial conditions. Often, task success is defined…

Robotics · Computer Science 2024-04-23 Ben Eisner , Yi Yang , Todor Davchev , Mel Vecerik , Jonathan Scholz , David Held

Accurate prediction of drug-target binding affinity can accelerate drug discovery by prioritizing promising compounds before costly wet-lab screening. While deep learning has advanced this task, most models fuse ligand and protein…

Machine Learning · Computer Science 2025-09-26 Mohammadsaleh Refahi , Bahrad A. Sokhansanj , James R. Brown , Gail Rosen

We present an exploration of machine learning architectures for predicting brain responses to realistic images on occasion of the Algonauts Challenge 2023. Our research involved extensive experimentation with various pretrained models.…

Neurons and Cognition · Quantitative Biology 2023-09-20 Riccardo Chimisso , Sathya Buršić , Paolo Marocco , Giuseppe Vizzari , Dimitri Ognibene

Convolutional Neutral Networks have been successfully applied in searching for strong lensing systems, leading to discoveries of new candidates from large surveys. On the other hand, systematic investigations about their robustness are…

Cosmology and Nongalactic Astrophysics · Physics 2020-07-15 Zizhao He , Xinzhong Er , Qian Long , Dezi Liu , Xiangkun Liu , Ziwei Li , Yun Liu , Wenqaing Deng , Zuhui Fan

Deep learning has enabled remarkable improvements in grasp synthesis for previously unseen objects from partial object views. However, existing approaches lack the ability to explicitly reason about the full 3D geometry of the object when…

Robotics · Computer Science 2020-03-19 Mark Van der Merwe , Qingkai Lu , Balakumar Sundaralingam , Martin Matak , Tucker Hermans

Human face pose estimation aims at estimating the gazing direction or head postures with 2D images. It gives some very important information such as communicative gestures, saliency detection and so on, which attracts plenty of attention…

Computer Vision and Pattern Recognition · Computer Science 2017-12-19 Chaoqun Hong , Jun Yu

In this work, we introduce Deep Bingham Networks (DBN), a generic framework that can naturally handle pose-related uncertainties and ambiguities arising in almost all real life applications concerning 3D data. While existing works strive to…

Computer Vision and Pattern Recognition · Computer Science 2020-12-22 Haowen Deng , Mai Bui , Nassir Navab , Leonidas Guibas , Slobodan Ilic , Tolga Birdal