Related papers: Edit Distance between Unrooted Trees in Cubic Time
Link-cut trees have been introduced by D.D. Sleator and R.E. Tarjan (Journal of Computer and System Sciences, 1983) with the aim of efficiently maintaining a forest of vertex-disjoint dynamic rooted trees under cut and link operations.…
A classic problem in unsupervised learning and data analysis is to find simpler and easy-to-visualize representations of the data that preserve its essential properties. A widely-used method to preserve the underlying hierarchical structure…
Suppose that we have two parties that possess each a binary string. Suppose that the length of the first string (document) is $n$ and that the two strings (documents) have edit distance (minimal number of deletes, inserts and substitutions…
Let $P$ and $S$ be two disjoint sets of $n$ and $m$ points in the plane, respectively. We consider the problem of computing a Steiner tree whose Steiner vertices belong to $S$, in which each point of $P$ is a leaf, and whose longest edge…
Many popular algorithms for searching the space of leaf-labelled trees are based on tree rearrangement operations. Under any such operation, the problem is reduced to searching a graph where vertices are trees and (undirected) edges are…
In this paper we study a family of algorithms, introduced by Chan [SODA 1999] and called LR-algorithms, for drawing ordered rooted binary trees. In particular, we are interested in constructing LR-drawings (that are drawings obtained via…
A merge tree is a fundamental topological structure used to capture the sub-level set (and similarly, super-level set) topology in scalar data analysis. The interleaving distance is a theoretically sound, stable metric for comparing merge…
We consider an efficient two-party protocol for securely computing the similarity of strings w.r.t. an extended edit distance measure. Here, two parties possessing strings $x$ and $y$, respectively, want to jointly compute an approximate…
For $n$-vertex graphs with treewidth $k = O(n^{1/2-\epsilon})$ and an arbitrary $\epsilon>0$, we present a word-RAM algorithm to compute vertex separators using only $O(n)$ bits of working memory. As an application of our algorithm, we give…
Sorting is a foundational problem in computer science that is typically employed on sequences or total orders. More recently, a more general form of sorting on partially ordered sets (or posets), where some pairs of elements are…
We consider a classical k-center problem in trees. Let T be a tree of n vertices and every vertex has a nonnegative weight. The problem is to find k centers on the edges of T such that the maximum weighted distance from all vertices to…
Comparative analysis of scalar fields in scientific visualization often involves distance functions on topological abstractions. This paper focuses on the merge tree abstraction (representing the nesting of sub- or superlevel sets) and…
The tree-cut width of a graph is a graph parameter defined by Wollan [J. Comb. Theory, Ser. B, 110:47-66, 2015] with the help of tree-cut decompositions. In certain cases, tree-cut width appears to be more adequate than treewidth as an…
Folded Reed-Solomon codes are an explicit family of codes that achieve the optimal trade-off between rate and error-correction capability: specifically, for any $\eps > 0$, the author and Rudra (2006,08) presented an $n^{O(1/\eps)}$ time…
We study the problem of approximating edit distance in sublinear time. This is formalized as the $(k,k^c)$-Gap Edit Distance problem, where the input is a pair of strings $X,Y$ and parameters $k,c>1$, and the goal is to return YES if…
The Hausdorff distance is a relatively new measure of similarity of graphs. The notion of the Hausdorff distance considers a special kind of a common subgraph of the compared graphs and depends on the structural properties outside of the…
We consider the problem of preprocessing two strings $S$ and $T$, of lengths $m$ and $n$, respectively, in order to be able to efficiently answer the following queries: Given positions $i,j$ in $S$ and positions $a,b$ in $T$, return the…
We present sublinear-time (randomized) algorithms for finding simple cycles of length at least $k\geq 3$ and tree-minors in bounded-degree graphs. The complexity of these algorithms is related to the distance of the graph from being…
We consider the fundamental problems of determining the rooted and global edge and vertex connectivities (and computing the corresponding cuts) in directed graphs. For rooted (and hence also global) edge connectivity with small integer…
Given two binary trees on $N$ labeled leaves, the quartet distance between the trees is the number of disagreeing quartets. By permuting the leaves at random, the expected quartets distance between the two trees is…